feat: add read/write support for zarr v2/n5

.github/workflows/tox.yaml

@@ -16,20 +16,17 @@ jobs:
       matrix:
         python-version: [ '3.12', '3.11', '3.10', '3.9', '3.8', '3.7' ]
         runs-on: ['ubuntu-latest']
-        include:
-        - runs-on: 'ubuntu-20.04'
-          python-version: '3.6'
     runs-on: ${{ matrix.runs-on }}
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         lfs: true
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: PIP cache
-      uses: actions/cache@v2
+      uses: actions/cache@v4
       with:
         path: ~/.cache/pip
         key: ${{ runner.os }}-pip-python${{ matrix.python-version }}-${{ hashFiles('setup.cfg') }}

.pre-commit-config.yaml

@@ -21,6 +21,7 @@ repos:
   hooks:
     # Run the linter.
     - id: ruff
+      args: [--fix]
 
 -   repo: https://github.com/mgedmin/check-manifest
     rev: "0.49"

setup.cfg

@@ -13,7 +13,6 @@ classifiers =
     Intended Audience :: Science/Research
     License :: OSI Approved :: MIT License
     Programming Language :: Python :: 3
-    Programming Language :: Python :: 3.6
     Programming Language :: Python :: 3.7
     Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
@@ -28,14 +27,15 @@ keywords = neuroimaging
 package_dir =
     = src
 packages = find:
-python_requires = ~=3.6
+python_requires = ~=3.7
 install_requires =
     nibabel >= 2
     numpy >= 1.17
     pillow >= 1.1.6
     requests >= 2
     scikit-image  # TODO use pillow instead
     tqdm ~= 4.29
+    numcodecs
     imagecodecs  # required to read LZW compressed tiff files
 
 [options.packages.find]