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Merged
merged 8 commits into from
Apr 1, 2025
Merged

Added spatio-temporal scale #1576

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5a94173
Added spatio-temporal scale
timalamenciak Dec 12, 2024
d6df28b
Removed scale under qualitative and added under PATO age and size
timalamenciak Dec 16, 2024
b0d70b4
Merge branch 'EnvironmentOntology:master' into issue-1569
timalamenciak Feb 3, 2025
b3cd75f
Added landscape size and age scales revised according to feedback fro…
timalamenciak Feb 4, 2025
0370d3e
Added landscape scale and age with revisions from PL & CM
timalamenciak Feb 4, 2025
ff5374f
Normalizing, per @matentzn recommendation
timalamenciak Mar 25, 2025
bc5bbfb
Merge branch 'master' into issue-1569
matentzn Apr 1, 2025
d2bb7ee
Merge branch 'master' into issue-1569
matentzn Apr 1, 2025
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107 changes: 107 additions & 0 deletions src/envo/envo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4140,6 +4140,22 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605009>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620002>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620003>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620004>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620005>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620006>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620010>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620011>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620012>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620013>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620014>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620015>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620016>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620017>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000002>))
Expand Down Expand Up @@ -4336,6 +4352,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000323>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000963>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001351>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001360>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001486>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001576>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001595>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001657>))
Expand Down Expand Up @@ -46456,6 +46473,78 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620000> "biogeographic realm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620000> <http://purl.obolibrary.org/obo/ENVO_01000254>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620001> (landscape macroscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620001> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 10,000 and 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620001> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620001> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620001> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620001> "landscape macroscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620001> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620002> (landscape megascale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") Annotation(rdfs:comment "https://en.wikipedia.org/wiki/Scale_(geography)") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620002> "Chronological age which inheres in a bearer by virtue of that bearer existing for more than 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620002> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620002> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620002> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620002> "landscape megascale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620003> (landscape mesoscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620003> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 500 and 10,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620003> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620003> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620003> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620003> "landscape mesoscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620004> (landscape microscale age)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620004> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 1 and 500 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620004> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620004> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620004> "2025-02-03T21:04:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620004> "landscape microscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620004> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620005> (landscape microscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620005> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 1 and 10e6 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620005> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620005> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620005> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620005> "landscape microscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620005> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620006> (landscape mesoscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620006> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 10e6 and 10e10 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620006> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620006> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620006> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620006> "landscape mesoscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620006> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620007> (landscape macroscale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620007> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 10e10 and 10e12 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620007> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620007> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620007> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620007> "landscape macroscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620007> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620008> (landscape megascale size)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Scale_(geography)") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://link.springer.com/article/10.1007/BF00138906") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620008> "An area quality which inheres in a bearer by virtue of that bearer having an area of greater than 10e12 square meters.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620008> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620008> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620008> "2025-02-03T21:12:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620008> "landscape megascale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620008> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_04000000> (adfreezing)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.merriam-webster.com/dictionary/adfreezing") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_04000000> "Adfreezing is a freezing process during which two objects adhere to each other via ice.")
Expand Down Expand Up @@ -48515,6 +48604,21 @@ SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000967> <http://purl.obolibrary.

SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000968> <http://purl.obolibrary.org/obo/ENVO_00003074>)

# Class: <http://purl.obolibrary.org/obo/PATO_0001486> (chronological age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0001486> "An age quality that exists by virtue of the time (years and months) that the bearer has existed.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0001486> "chronological age")
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0001486> <http://purl.obolibrary.org/obo/PATO_0000011>)

# Class: <http://purl.obolibrary.org/obo/PATO_0002057> (increased area)


# Class: <http://purl.obolibrary.org/obo/PATO_0002058> (decreased area)


# Class: <http://purl.obolibrary.org/obo/PATO_0045051> (normal area)



############################
# Named Individuals
Expand Down Expand Up @@ -49028,6 +49132,8 @@ ClassAssertion(<http://purl.obolibrary.org/obo/ENVO_00000015> <https://www.wikid
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/BFO_0000050> <https://www.wikidata.org/wiki/Q715269> <https://www.wikidata.org/wiki/Q2>)


DisjointClasses(<http://purl.obolibrary.org/obo/ENVO_03620001> <http://purl.obolibrary.org/obo/ENVO_03620002> <http://purl.obolibrary.org/obo/ENVO_03620003> <http://purl.obolibrary.org/obo/ENVO_03620004>)
DisjointClasses(<http://purl.obolibrary.org/obo/ENVO_03620005> <http://purl.obolibrary.org/obo/ENVO_03620006> <http://purl.obolibrary.org/obo/ENVO_03620007> <http://purl.obolibrary.org/obo/ENVO_03620008> <http://purl.obolibrary.org/obo/PATO_0002057> <http://purl.obolibrary.org/obo/PATO_0002058> <http://purl.obolibrary.org/obo/PATO_0045051>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53243> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_53550> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_60034> <http://purl.obolibrary.org/obo/envo#envoPlastics>)
Expand All @@ -49051,6 +49157,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000111> "editor preferred term~editor preferred label")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000412> "imported from")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000424> "expand expression to")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0000068> "A quality of an entity that is descriptive or observational, typically not represented numerically.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0001900> "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0001900> "temporal interpretation")
)