Skip to content

Force set --offline if no database setup #1797

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Jan 14, 2025

Add a warning message

ffd4bd2
Select commit
Loading
Failed to load commit list.
Merged

Force set --offline if no database setup #1797

Add a warning message
ffd4bd2
Select commit
Loading
Failed to load commit list.
Travis CI / Travis CI - Pull Request required action Jan 14, 2025 in 25m 46s

Build Errored

The build errored. This is a change from the previous build, which passed.

Details

This is a pull request build.

It is running a build against the merge commit, after merging #1797 Force set --offline if no database setup.
Any changes that have been made to the postreleasefix/114 branch before the build ran are also included.

Jobs and Stages

This build has six jobs, running in two sequential stages.

Stage 1: test

This stage errored.

Job Perl ENV OS State
3947.1 5.10 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3947.2 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3947.3 5.18 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3947.4 5.22 [One of the secure variables in your .travis.yml has an invalid format.] Linux errored
3947.5 5.26 [One of the secure variables in your .travis.yml has an invalid format.] Linux errored

Stage 2: trigger_dependent_builds

This stage canceled.

Job Perl ENV OS State
3947.6 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux canceled

Build Configuration

Build Option Setting
Language Perl
Operating System Linux (Trusty)
Perl Versions 5.10, 5.14, 5.18, 5.22, 5.26
Build Configuration
{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "trusty",
  "perl": [
    "5.10",
    "5.14",
    "5.18",
    "5.22",
    "5.26"
  ],
  "env": [
    "jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"} global=[One of the secure variables in your .travis.yml has an invalid format.]"
  ],
  "group": "deprecated",
  "addons": {
    "apt": {
      "packages": [
        "unzip",
        "mysql-server-5.6",
        "apache2",
        "libmysqlclient-dev",
        "libpng12-dev",
        "libssl-dev",
        "openssl",
        "mysql-client-5.6",
        "mysql-client-core-5.6"
      ]
    }
  },
  "before_install": [
    "export ENSEMBL_BRANCH=main",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-variation.git",
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "mkdir -p $DEPS",
    "cd $DEPS",
    "$CWD/travisci/get_dependencies.sh",
    "cd $CWD"
  ],
  "install": [
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "export KENT_SRC=\"$DEPS/kent-335_base/src\"",
    "export HTSLIB_DIR=\"$DEPS/htslib\"",
    "export MACHTYPE=$(uname -m)",
    "export CFLAGS=\"-fPIC\"",
    "export PERL5LIB=$DEPS/bioperl-live:$PERL5LIB",
    "cd $DEPS",
    "$CWD/travisci/build_c.sh",
    "cd $CWD",
    "$CWD/travisci/install_dependencies.sh",
    "cp travisci/MultiTestDB.conf.travisci  t/MultiTestDB.conf"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "jobs": {
    "include": [
      {
        "stage": "trigger_dependent_builds",
        "script": [
          "./travisci/trigger-dependent-build.sh"
        ],
        "perl": "5.14"
      }
    ]
  },
  "notifications": {
    "email": [
      {
        "on_success": "always",
        "on_failure": "always"
      }
    ]
  }
}