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ElDeveloper · Oct 4, 2016 · 5aa16c1 · 5aa16c1
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diff --git a/README.md b/README.md
@@ -2,10 +2,11 @@ Analysis Notebooks
 ==================
 
 This repository contains the notebooks used to create the analyses in
-Vazquez-Baeza et. al. 20XX. Each notebook tries to summarize a particular step
-and be as standalone as possible. In this document we briefly describe each of
-the analyses needed for the paper and when possible we group them together, so
-as to provide more cohesion.
+[Vazquez-Baeza et al. 2016](http://www.nature.com/articles/nmicrobiol2016177).
+Each notebook tries to summarize a particular step and be as standalone as
+possible. In this document we briefly describe each of the analyses needed for
+the paper and when possible we group them together, so as to provide more
+cohesion.
 
 #### Important notes for the reader
 

diff --git a/manuscript/figure-1.pdf b/manuscript/figure-1.pdf
diff --git a/manuscript/figure-2.pdf b/manuscript/figure-2.pdf
diff --git a/manuscript/main-submission.pdf b/manuscript/main-submission.pdf
diff --git a/manuscript/supplemental.pdf b/manuscript/supplemental.pdf