Allow for test cells that have no project.

EdinburghGenomics · Feb 2, 2024 · a1027ef · a1027ef
1 parent 1353106
commit a1027ef
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/smrtino/ParseXML.py b/smrtino/ParseXML.py
@@ -231,8 +231,8 @@ def get_readset_info(xmlfile, smrtlink_base=None):
         # Take the project from the sample in any case
         info['project'] = info['bs_project']
     else:
-        # Really?
-        info['project'] = info['ws_project']
+        # Really? Could be a test run and not have a project.
+        info['project'] = info.get('ws_project') or "none"
 
     if smrtlink_base:
         info['_link'] = get_smrtlink_link(root, smrtlink_base)