Update all pre-commit versions (#3678)

Co-authored-by: Emma Hogan <[email protected]>

.pre-commit-config.yaml

@@ -8,7 +8,7 @@ exclude: |
   ^esmvaltool/diag_scripts/cvdp/
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.6.0
     hooks:
       - id: check-added-large-files
       - id: check-ast
@@ -19,7 +19,7 @@ repos:
       - id: trailing-whitespace
         args: [--markdown-linebreak-ext=md]
   - repo: https://github.com/adrienverge/yamllint
-    rev: 'v1.31.0'
+    rev: 'v1.35.1'
     hooks:
       - id: yamllint
   - repo: local  # nclcodestyle is installed alongside ESMValTool
@@ -30,16 +30,16 @@ repos:
         language: system
         files: '\.(ncl|NCL)$'
   - repo: https://github.com/lorenzwalthert/precommit/  # Checks for R
-    rev: 'v0.3.2.9007'
+    rev: 'v0.4.2'
     hooks:
       - id: style-files  # styler
       - id: lintr
   - repo: https://github.com/codespell-project/codespell
-    rev: 'v2.2.4'
+    rev: 'v2.3.0'
     hooks:
       - id: codespell
   - repo: https://github.com/PyCQA/isort
-    rev: '5.12.0'
+    rev: '5.13.2'
     hooks:
       - id: isort
   - repo: https://github.com/pre-commit/mirrors-yapf
@@ -49,10 +49,10 @@ repos:
         additional_dependencies:
           - 'toml'
   - repo: https://github.com/myint/docformatter
-    rev: 'v1.6.5'
+    rev: 'v1.7.5'
     hooks:
       - id: docformatter
   - repo: https://github.com/pycqa/flake8
-    rev: '6.0.0'
+    rev: '5.0.4'
     hooks:
       - id: flake8

environment.yml

@@ -70,7 +70,7 @@ dependencies:
   - xlsxwriter
   - zarr
   # Python packages needed for unit testing
-  - flake8
+  - flake8 ==5.0.4
   - pytest >=3.9,!=6.0.0rc1,!=6.0.0
   - pytest-cov
   - pytest-env
@@ -84,16 +84,16 @@ dependencies:
   - sphinx >=6.1.3
   - pydata-sphinx-theme
   # Python packages needed for development
-  - codespell
-  - docformatter
+  - codespell ==2.3.0
+  - docformatter ==1.7.5
   - imagehash
-  - isort
+  - isort ==5.13.2
   - pre-commit
   - prospector
   - pyroma
   # - vprof not on conda-forge
-  - yamllint
-  - yapf
+  - yamllint ==1.35.1
+  - yapf ==0.32.0
 
   # NCL and dependencies
   - ncl
@@ -113,7 +113,6 @@ dependencies:
   - r-functional
   - r-ggplot2
   - r-gridextra
-  - r-lintr
   - r-logging
   - r-mapproj
   - r-maps
@@ -127,13 +126,12 @@ dependencies:
   - r-s2dverification
   - r-snow
   - r-spei
-  - r-styler
   - r-udunits2
   - r-yaml
   # R packages needed for development
   - r-git2r  # dependency of lintr
-  - r-lintr
-  - r-styler
+  - r-lintr ==3.1.2
+  - r-styler ==1.10.3
 
   # Julia (dependencies installed by separate script)
   - julia

environment_osx.yml

@@ -24,8 +24,8 @@ dependencies:
   - esmpy >=8.6.0  # github.com/SciTools-incubator/iris-esmf-regrid/pull/342
   - esmvalcore 2.10.*
   - fiona
-  - fsspec
   - fire
+  - fsspec
   - gdal
   - iris >=3.6.1
   - iris-esmf-regrid >=0.10.0  # github.com/SciTools-incubator/iris-esmf-regrid/pull/342
@@ -70,7 +70,7 @@ dependencies:
   - xlsxwriter
   - zarr
   # Python packages needed for unit testing
-  - flake8
+  - flake8 ==5.0.4
   - pytest >=3.9,!=6.0.0rc1,!=6.0.0
   - pytest-cov
   - pytest-env
@@ -84,13 +84,13 @@ dependencies:
   - sphinx >=6.1.3
   - pydata-sphinx-theme
   # Python packages needed for development
-  - codespell
-  - docformatter
+  - codespell ==2.3.0
+  - docformatter ==1.7.5
   - imagehash
-  - isort
+  - isort ==5.13.2
   - pre-commit
   - prospector
   - pyroma
   # - vprof not on conda-forge
-  - yamllint
-  - yapf
+  - yamllint ==1.35.1
+  - yapf ==0.32.0