use cypress for e2e tests

.github/workflows/test.yaml

@@ -11,6 +11,10 @@ jobs:
         with:
           node-version: '14'
       - run: npm install
-      - run: npm test -- --coverage
+      - run: npm run start
+      - name: Cypress run
+        uses: cypress-io/github-action@v2
+        with:
+          browser: chrome
       - name: upload coverage to Codecov
         uses: codecov/codecov-action@v2

.gitignore

@@ -23,3 +23,6 @@
 npm-debug.log*
 yarn-debug.log*
 yarn-error.log*
+
+cypress/screenshots
+cypress/videos

cypress.json

@@ -0,0 +1,3 @@
+{
+  "testFiles": "**/*.test.js"
+}

cypress/fixtures/dbs.json

@@ -0,0 +1,12 @@
+[
+  {
+    "id": 1,
+    "xxh64": -2550112168598887000,
+    "filename": "pfam24.dcp"
+  },
+  {
+    "id": 2,
+    "xxh64": 7603259662449547000,
+    "filename": "Pfam-A.quarter.dcp"
+  }
+]

cypress/fixtures/job_done.json

@@ -0,0 +1,10 @@
+{
+  "id": 99,
+  "type": 0,
+  "state": "done",
+  "progress": 100,
+  "error": "",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/job_failed.json

@@ -0,0 +1,10 @@
+{
+  "id": 103,
+  "type": 0,
+  "state": "fail",
+  "progress": 0,
+  "error": "Something awful happened",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/job_next_pend.json

@@ -0,0 +1,11 @@
+{
+  "id": 90,
+  "db_id": 0,
+  "multi_hits": false,
+  "hmmer3_compat": false,
+  "state": "pend",
+  "error": "",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/job_pending.json

@@ -0,0 +1,10 @@
+{
+  "id": 100,
+  "type": 0,
+  "state": "pend",
+  "progress": 0,
+  "error": "",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/job_running.json

@@ -0,0 +1,10 @@
+{
+  "id": 101,
+  "type": 0,
+  "state": "run",
+  "progress": 50,
+  "error": "",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/prod_all.json

@@ -0,0 +1,38 @@
+[
+  {
+    "id": 92,
+    "scan_id": 9,
+    "seq_id": 156,
+    "profile_name": "PF00742.20",
+    "abc_name": "dna",
+    "alt_loglik": -547.8771362304688,
+    "null_loglik": -690.8677368164062,
+    "profile_typeid": "protein",
+    "version": "0.1.0",
+    "match": ",S,,;,B,,;CCT,M1,CCT,P;ATC,M2,ATC,I;ATT,M3,ATT,I;TCG,M4,TCG,S;ACG,M5,ACG,T;CTC,M6,CTC,L;AAG,M7,AAG,K;GAG,M8,GAG,E;TCG,M9,TCG,S;CTG,M10,CTG,L;ACA,M11,ACA,T;GGT,M12,GGT,G;GAC,M13,GAC,D;CGT,M14,CGT,R;ATT,M15,ATT,I;ACT,M16,ACT,T;CGA,M17,CGA,R;ATC,M18,ATC,I;GAA,M19,GAA,E;GGG,M20,GGG,G;ATA,M21,ATA,I;TTA,M22,TTA,L;AAC,M23,AAC,N;GGC,M24,GGC,G;ACC,M25,ACC,T;CTG,M26,CTG,L;AAT,M27,AAT,N;TAC,M28,TAC,Y;ATT,M29,ATT,I;CTC,M30,CTC,L;ACT,M31,ACT,T;GAG,M32,GAG,E;ATG,M33,ATG,M;GAG,M34,GAG,E;GAA,M35,GAA,E;GAG,M36,GAG,E;GGG,M37,GGG,G;GCT,M38,GCT,A;TCA,M39,TCA,S;TTC,M40,TTC,F;TCT,M41,TCT,S;GAG,M42,GAG,E;GCG,M43,GCG,A;CTG,M44,CTG,L;AAG,M45,AAG,K;GAG,M46,GAG,E;GCA,M47,GCA,A;CAG,M48,CAG,Q;GAA,M49,GAA,E;TTG,M50,TTG,L;GGC,M51,GGC,G;TAC,M52,TAC,Y;GCG,M53,GCG,A;GAA,M54,GAA,E;GCG,M55,GCG,A;GAT,M56,GAT,D;CCT,M57,CCT,P;ACG,M58,ACG,T;GAC,M59,GAC,D;GAT,M60,GAT,D;GTG,M61,GTG,V;GAA,M62,GAA,E;GGG,M63,GGG,G;CTA,M64,CTA,L;GAT,M65,GAT,D;GCT,M66,GCT,A;GCT,M67,GCT,A;AGA,M68,AGA,R;AAG,M69,AAG,K;CTG,M70,CTG,L;GCA,M71,GCA,A;ATT,M72,ATT,I;CTA,M73,CTA,L;GCC,M74,GCC,A;AGA,M75,AGA,R;TTG,M76,TTG,L;GCA,M77,GCA,A;TTT,M78,TTT,F;GGG,M79,GGG,G;TTA,M80,TTA,L;GAG,M81,GAG,E;GTC,M82,GTC,V;GAG,M83,GAG,E;TTG,M84,TTG,L;GAG,M85,GAG,E;GAC,M86,GAC,D;GTA,M87,GTA,V;GAG,M88,GAG,E;GTG,M89,GTG,V;GAA,M90,GAA,E;GGA,M91,GGA,G;ATT,M92,ATT,I;GAA,M93,GAA,E;AAG,M94,AAG,K;CTG,M95,CTG,L;ACT,M96,ACT,T;GCC,M97,GCC,A;GAA,M98,GAA,E;GAT,M99,GAT,D;ATT,M100,ATT,I;GAA,M101,GAA,E;GAA,M102,GAA,E;GCG,M103,GCG,A;AAG,M104,AAG,K;GAA,M105,GAA,E;GAG,M106,GAG,E;GGT,M107,GGT,G;AAA,M108,AAA,K;GTT,M109,GTT,V;TTA,M110,TTA,L;AAA,M111,AAA,K;CTA,M112,CTA,L;GTG,M113,GTG,V;GCA,M114,GCA,A;AGC,M115,AGC,S;GCC,M116,GCC,A;GTC,M117,GTC,V;GAA,M118,GAA,E;GCC,M119,GCC,A;AGG,M120,AGG,R;GTC,M121,GTC,V;AAG,M122,AAG,K;CCT,M123,CCT,P;GAG,M124,GAG,E;CTG,M125,CTG,L;GTA,M126,GTA,V;CCT,M127,CCT,P;AAG,M128,AAG,K;TCA,M129,TCA,S;CAT,M130,CAT,H;CCA,M131,CCA,P;TTA,M132,TTA,L;GCC,M133,GCC,A;TCG,M134,TCG,S;GTA,M135,GTA,V;AAA,M136,AAA,K;GGC,M137,GGC,G;TCT,M138,TCT,S;GAC,M139,GAC,D;AAC,M140,AAC,N;GCC,M141,GCC,A;GTG,M142,GTG,V;GCT,M143,GCT,A;GTA,M144,GTA,V;GAA,M145,GAA,E;ACG,M146,ACG,T;GAA,M147,GAA,E;CGG,M148,CGG,R;GTA,M149,GTA,V;GGC,M150,GGC,G;GAA,M151,GAA,E;CTC,M152,CTC,L;GTA,M153,GTA,V;GTG,M154,GTG,V;CAG,M155,CAG,Q;GGA,M156,GGA,G;CCA,M157,CCA,P;GGG,M158,GGG,G;GCT,M159,GCT,A;GGC,M160,GGC,G;GCA,M161,GCA,A;GAG,M162,GAG,E;CCA,M163,CCA,P;ACC,M164,ACC,T;GCA,M165,GCA,A;TCC,M166,TCC,S;GCT,M167,GCT,A;GTA,M168,GTA,V;CTC,M169,CTC,L;GCT,M170,GCT,A;GAC,M171,GAC,D;CTT,M172,CTT,L;CTC,M173,CTC,L;,E,,;,T,,"
+  },
+  {
+    "id": 93,
+    "scan_id": 9,
+    "seq_id": 157,
+    "profile_name": "PF00696.29",
+    "abc_name": "dna",
+    "alt_loglik": -802.6513061523438,
+    "null_loglik": -974.4751586914062,
+    "profile_typeid": "protein",
+    "version": "0.1.0",
+    "match": ",S,,;,B,,;AAA,M1,AAA,K;CGT,M2,CGT,R;GTA,M3,GTA,V;GTT,M4,GTT,V;GTA,M5,GTA,V;AAG,M6,AAG,K;CTT,M7,CTT,L;GGG,M8,GGG,G;GGT,M9,GGT,G;AGT,M10,AGT,S;TCT,M11,TCT,S;CTG,M12,CTG,L;ACA,M13,ACA,T;GAT,M14,GAT,D;AAG,M15,AAG,K;GAA,M16,GAA,E;GAG,M17,GAG,E;GCA,M18,GCA,A;TCA,M19,TCA,S;CTC,M20,CTC,L;AGG,M21,AGG,R;CGT,M22,CGT,R;TTA,M23,TTA,L;GCT,M24,GCT,A;GAG,M25,GAG,E;CAG,M26,CAG,Q;ATT,M27,ATT,I;GCA,M28,GCA,A;GCA,M29,GCA,A;TTA,M30,TTA,L;AAA,M31,AAA,K;GAG,M32,GAG,E;AGT,M33,AGT,S;GGC,M34,GGC,G;AAT,M35,AAT,N;AAA,M36,AAA,K;CTA,M37,CTA,L;GTG,M38,GTG,V;GTC,M39,GTC,V;GTG,M40,GTG,V;CAT,M41,CAT,H;GGA,M42,GGA,G;GGC,M43,GGC,G;GGC,M44,GGC,G;AGC,M45,AGC,S;TTC,M46,TTC,F;ACT,M47,ACT,T;GAT,M48,GAT,D;GGT,M49,GGT,G;CTG,M50,CTG,L;CTG,M51,CTG,L;GCA,M52,GCA,A;TTG,M53,TTG,L;AAA,M54,AAA,K;AGT,M55,AGT,S;GGC,M56,GGC,G;CTG,M57,CTG,L;AGC,M58,AGC,S;TCG,M59,TCG,S;GGC,M60,GGC,G;GAA,M61,GAA,E;TTA,M62,TTA,L;GCT,M63,GCT,A;GCG,M64,GCG,A;GGG,M65,GGG,G;TTG,M66,TTG,L;AGG,M67,AGG,R;AGC,M68,AGC,S;ACG,M69,ACG,T;TTA,M70,TTA,L;GAA,M71,GAA,E;GAG,M72,GAG,E;GCC,M73,GCC,A;GGA,M74,GGA,G;GAA,M75,GAA,E;GTA,M76,GTA,V;GCG,M77,GCG,A;ACG,M78,ACG,T;AGG,M79,AGG,R;GAC,M80,GAC,D;GCC,M81,GCC,A;CTA,M82,CTA,L;GCT,M83,GCT,A;AGC,M84,AGC,S;TTA,M85,TTA,L;GGG,M86,GGG,G;GAA,M87,GAA,E;CGG,M88,CGG,R;CTT,M89,CTT,L;GTT,M90,GTT,V;GCA,M91,GCA,A;GCG,M92,GCG,A;CTG,M93,CTG,L;CTG,M94,CTG,L;GCG,M95,GCG,A;GCG,M96,GCG,A;GGT,M97,GGT,G;CTC,M98,CTC,L;CCT,M99,CCT,P;GCT,M100,GCT,A;GTA,M101,GTA,V;GGA,M102,GGA,G;CTC,M103,CTC,L;AGC,M104,AGC,S;GCC,M105,GCC,A;GCT,M106,GCT,A;GCG,M107,GCG,A;TTA,M108,TTA,L;GAT,M109,GAT,D;GCG,M110,GCG,A;ACG,M111,ACG,T;GAG,M112,GAG,E;GCG,M113,GCG,A;GGC,M114,GGC,G;CGG,M115,CGG,R;GAT,M116,GAT,D;GAA,M117,GAA,E;GGC,M118,GGC,G;AGC,M119,AGC,S;GAC,M120,GAC,D;GGG,M121,GGG,G;AAC,M122,AAC,N;GTC,M123,GTC,V;GAG,M124,GAG,E;TCC,M125,TCC,S;GTG,M126,GTG,V;GAC,M127,GAC,D;GCA,M128,GCA,A;GAA,M129,GAA,E;GCA,M130,GCA,A;ATT,M131,ATT,I;GAG,M132,GAG,E;GAG,M133,GAG,E;TTG,M134,TTG,L;CTT,M135,CTT,L;GAG,M136,GAG,E;GCC,M137,GCC,A;GGG,M138,GGG,G;GTG,M139,GTG,V;GTC,M140,GTC,V;CCC,M141,CCC,P;GTC,M142,GTC,V;CTA,M143,CTA,L;ACA,M144,ACA,T;GGA,M145,GGA,G;TTT,M146,TTT,F;ATC,M147,ATC,I;GGC,M148,GGC,G;TTA,M149,TTA,L;GAC,M150,GAC,D;GAA,M151,GAA,E;GAA,M152,GAA,E;GGG,M153,GGG,G;GAA,M154,GAA,E;CTG,M155,CTG,L;GGA,M156,GGA,G;AGG,M157,AGG,R;GGA,M158,GGA,G;TCT,M159,TCT,S;TCT,M160,TCT,S;GAC,M161,GAC,D;ACC,M162,ACC,T;ATC,M163,ATC,I;GCT,M164,GCT,A;GCG,M165,GCG,A;TTA,M166,TTA,L;CTC,M167,CTC,L;GCT,M168,GCT,A;GAA,M169,GAA,E;GCT,M170,GCT,A;TTA,M171,TTA,L;GGC,M172,GGC,G;GCG,M173,GCG,A;GAC,M174,GAC,D;AAA,M175,AAA,K;CTC,M176,CTC,L;ATA,M177,ATA,I;ATA,M178,ATA,I;CTG,M179,CTG,L;ACC,M180,ACC,T;GAC,M181,GAC,D;GTA,M182,GTA,V;GAC,M183,GAC,D;GGC,M184,GGC,G;GTT,M185,GTT,V;TAC,M186,TAC,Y;GAT,M187,GAT,D;GCC,M188,GCC,A;GAC,M189,GAC,D;CCT,M190,CCT,P;AAA,M191,AAA,K;AAG,M192,AAG,K;GTC,M193,GTC,V;CCA,M194,CCA,P;GAC,M195,GAC,D;GCG,M196,GCG,A;AGG,M197,AGG,R;CTC,M198,CTC,L;TTG,M199,TTG,L;CCA,M200,CCA,P;GAG,M201,GAG,E;ATA,M202,ATA,I;AGT,M203,AGT,S;GTG,M204,GTG,V;GAC,M205,GAC,D;GAG,M206,GAG,E;GCC,M207,GCC,A;GAG,M208,GAG,E;GAA,M209,GAA,E;AGC,M210,AGC,S;GCC,M211,GCC,A;TCC,M212,TCC,S;GAA,M213,GAA,E;TTA,M214,TTA,L;GCG,M215,GCG,A;ACC,M216,ACC,T;GGT,M217,GGT,G;GGG,M218,GGG,G;ATG,M219,ATG,M;AAG,M220,AAG,K;GTC,M221,GTC,V;AAA,M222,AAA,K;CAT,M223,CAT,H;CCA,M224,CCA,P;GCG,M225,GCG,A;GCT,M226,GCT,A;CTT,M227,CTT,L;GCT,M228,GCT,A;GCA,M229,GCA,A;GCT,M230,GCT,A;AGA,M231,AGA,R;CGG,M232,CGG,R;GGG,M233,GGG,G;GGT,M234,GGT,G;ATT,M235,ATT,I;CCG,M236,CCG,P;GTC,M237,GTC,V;GTG,M238,GTG,V;ATA,M239,ATA,I;ACG,M240,ACG,T;AAT,M241,AAT,N;,E,,;,T,,"
+  },
+  {
+    "id": 94,
+    "scan_id": 9,
+    "seq_id": 158,
+    "profile_name": "PF16620.6",
+    "abc_name": "dna",
+    "alt_loglik": -489.9395751953125,
+    "null_loglik": -667.2943725585938,
+    "profile_typeid": "protein",
+    "version": "0.1.0",
+    "match": ",S,,;,B,,;CAG,M1,CAG,Q;GGT,M2,GGT,G;CTG,M3,CTG,L;GAT,M4,GAT,D;AAC,M5,AAC,N;GCT,M6,GCT,A;AAT,M7,AAT,N;CGT,M8,CGT,R;TCG,M9,TCG,S;CTA,M10,CTA,L;GTT,M11,GTT,V;CGC,M12,CGC,R;GCT,M13,GCT,A;ACA,M14,ACA,T;AAA,M15,AAA,K;GCA,M16,GCA,A;GAA,M17,GAA,E;AGT,M18,AGT,S;TCA,M19,TCA,S;GAT,M20,GAT,D;ATA,M21,ATA,I;CGG,M22,CGG,R;AAA,M23,AAA,K;GAG,M24,GAG,E;GTG,M25,GTG,V;ACT,M26,ACT,T;AAC,M27,AAC,N;GGC,M28,GGC,G;ATC,M29,ATC,I;GCT,M30,GCT,A;AAA,M31,AAA,K;GGG,M32,GGG,G;CTG,M33,CTG,L;AAG,M34,AAG,K;CTA,M35,CTA,L;GAC,M36,GAC,D;AGT,M37,AGT,S;CTG,M38,CTG,L;GAA,M39,GAA,E;ACA,M40,ACA,T;GCT,M41,GCT,A;GCA,M42,GCA,A;GAG,M43,GAG,E;TCG,M44,TCG,S;AAG,M45,AAG,K;AAC,M46,AAC,N;TGC,M47,TGC,C;TCA,M48,TCA,S;AGC,M49,AGC,S;GCA,M50,GCA,A;CAG,M51,CAG,Q;AAA,M52,AAA,K;GGC,M53,GGC,G;GGA,M54,GGA,G;TCG,M55,TCG,S;CTA,M56,CTA,L;GCT,M57,GCT,A;TGG,M58,TGG,W;GCA,M59,GCA,A;ACC,M60,ACC,T;AAC,M61,AAC,N;TCC,M62,TCC,S;CAA,M63,CAA,Q;CCA,M64,CCA,P;CAG,M65,CAG,Q;CCT,M66,CCT,P;CTC,M67,CTC,L;CGT,M68,CGT,R;GAA,M69,GAA,E;AGT,M70,AGT,S;AAG,M71,AAG,K;CTT,M72,CTT,L;GAG,M73,GAG,E;CCA,M74,CCA,P;TTG,M75,TTG,L;GAA,M76,GAA,E;GAC,M77,GAC,D;TCC,M78,TCC,S;CCA,M79,CCA,P;CGT,M80,CGT,R;AAG,M81,AAG,K;GCT,M82,GCT,A;TTA,M83,TTA,L;AAA,M84,AAA,K;ACA,M85,ACA,T;CCT,M86,CCT,P;GTG,M87,GTG,V;TTG,M88,TTG,L;CAA,M89,CAA,Q;AAG,M90,AAG,K;ACA,M91,ACA,T;TCC,M92,TCC,S;AGT,M93,AGT,S;ACC,M94,ACC,T;ATA,M95,ATA,I;ACT,M96,ACT,T;TTA,M97,TTA,L;CAA,M98,CAA,Q;GCA,M99,GCA,A;GTC,M100,GTC,V;AAG,M101,AAG,K;GTT,M102,GTT,V;CAA,M103,CAA,Q;CCT,M104,CCT,P;GAA,M105,GAA,E;CCC,M106,CCC,P;CGC,M107,CGC,R;GCT,M108,GCT,A;CCC,M109,CCC,P;GTC,M110,GTC,V;TCC,M111,TCC,S;GGG,M112,GGG,G;GCG,M113,GCG,A;CTG,M114,CTG,L;TCC,M115,TCC,S;CCG,M116,CCG,P;AGC,M117,AGC,S;GGG,M118,GGG,G;GAG,M119,GAG,E;GAA,M120,GAA,E;CGC,M121,CGC,R;AAG,M122,AAG,K;CGC,M123,CGC,R;CCA,M124,CCA,P;GCT,M125,GCT,A;GCG,M126,GCG,A;TCT,M127,TCT,S;GCT,M128,GCT,A;CCC,M129,CCC,P;GCT,M130,GCT,A;ACC,M131,ACC,T;TTA,M132,TTA,L;CCG,M133,CCG,P;ACA,M134,ACA,T;CGA,M135,CGA,R;CAG,M136,CAG,Q;AGT,M137,AGT,S;GGT,M138,GGT,G;CTA,M139,CTA,L;GGT,M140,GGT,G;TCT,M141,TCT,S;CAG,M142,CAG,Q;GAA,M143,GAA,E;GTC,M144,GTC,V;GTT,M145,GTT,V;TCG,M146,TCG,S;AAG,M147,AAG,K;GTG,M148,GTG,V;GCG,M149,GCG,A;ACT,M150,ACT,T;CGC,M151,CGC,R;AAA,M152,AAA,K;ATT,M153,ATT,I;CCA,M154,CCA,P;ATG,M155,ATG,M;GAG,M156,GAG,E;TCA,M157,TCA,S;CAA,M158,CAA,Q;CGC,M159,CGC,R;GAG,M160,GAG,E;TCG,M161,TCG,S;ACT,M162,ACT,T;,E,,;,T,,"
+  }
+]

cypress/fixtures/prod_amino.txt

@@ -0,0 +1,14 @@
+>1 Homoserine_dh-consensus
+PIISTLKESLTGDRITRIEGILNGTLNYILTEMEEEGASFSEALKEAQELGYAEADPTDD
+VEGLDAARKLAILARLAFGLEVELEDVEVEGIEKLTAEDIEEAKEEGKVLKLVASAVEAR
+VKPELVPKSHPLASVKGSDNAVAVETERVGELVVQGPGAGAEPTASAVLADLL
+>2 AA_kinase-consensus
+KRVVVKLGGSSLTDKEEASLRRLAEQIAALKESGNKLVVVHGGGSFTDGLLALKSGLSSG
+ELAAGLRSTLEEAGEVATRDALASLGERLVAALLAAGLPAVGLSAAALDATEAGRDEGSD
+GNVESVDAEAIEELLEAGVVPVLTGFIGLDEEGELGRGSSDTIAALLAEALGADKLIILT
+DVDGVYDADPKKVPDARLLPEISVDEAEESASELATGGMKVKHPAALAAARRGGIPVVIT
+N
+>3 23ISL-consensus
+QGLDNANRSLVRATKAESSDIRKEVTNGIAKGLKLDSLETAAESKNCSSAQKGGSLAWAT
+NSQPQPLRESKLEPLEDSPRKALKTPVLQKTSSTITLQAVKVQPEPRAPVSGALSPSGEE
+RKRPAASAPATLPTRQSGLGSQEVVSKVATRKIPMESQREST

cypress/fixtures/prod_codon.txt

@@ -0,0 +1,34 @@
+>1 Homoserine_dh-consensus
+CCTATCATTTCGACGCTCAAGGAGTCGCTGACAGGTGACCGTATTACTCGAATCGAAGGG
+ATATTAAACGGCACCCTGAATTACATTCTCACTGAGATGGAGGAAGAGGGGGCTTCATTC
+TCTGAGGCGCTGAAGGAGGCACAGGAATTGGGCTACGCGGAAGCGGATCCTACGGACGAT
+GTGGAAGGGCTAGATGCTGCTAGAAAGCTGGCAATTCTAGCCAGATTGGCATTTGGGTTA
+GAGGTCGAGTTGGAGGACGTAGAGGTGGAAGGAATTGAAAAGCTGACTGCCGAAGATATT
+GAAGAAGCGAAGGAAGAGGGTAAAGTTTTAAAACTAGTGGCAAGCGCCGTCGAAGCCAGG
+GTCAAGCCTGAGCTGGTACCTAAGTCACATCCATTAGCCTCGGTAAAAGGCTCTGACAAC
+GCCGTGGCTGTAGAAACGGAACGGGTAGGCGAACTCGTAGTGCAGGGACCAGGGGCTGGC
+GCAGAGCCAACCGCATCCGCTGTACTCGCTGACCTTCTC
+>2 AA_kinase-consensus
+AAACGTGTAGTTGTAAAGCTTGGGGGTAGTTCTCTGACAGATAAGGAAGAGGCATCACTC
+AGGCGTTTAGCTGAGCAGATTGCAGCATTAAAAGAGAGTGGCAATAAACTAGTGGTCGTG
+CATGGAGGCGGCAGCTTCACTGATGGTCTGCTGGCATTGAAAAGTGGCCTGAGCTCGGGC
+GAATTAGCTGCGGGGTTGAGGAGCACGTTAGAAGAGGCCGGAGAAGTAGCGACGAGGGAC
+GCCCTAGCTAGCTTAGGGGAACGGCTTGTTGCAGCGCTGCTGGCGGCGGGTCTCCCTGCT
+GTAGGACTCAGCGCCGCTGCGTTAGATGCGACGGAGGCGGGCCGGGATGAAGGCAGCGAC
+GGGAACGTCGAGTCCGTGGACGCAGAAGCAATTGAGGAGTTGCTTGAGGCCGGGGTGGTC
+CCCGTCCTAACAGGATTTATCGGCTTAGACGAAGAAGGGGAACTGGGAAGGGGATCTTCT
+GACACCATCGCTGCGTTACTCGCTGAAGCTTTAGGCGCGGACAAACTCATAATACTGACC
+GACGTAGACGGCGTTTACGATGCCGACCCTAAAAAGGTCCCAGACGCGAGGCTCTTGCCA
+GAGATAAGTGTGGACGAGGCCGAGGAAAGCGCCTCCGAATTAGCGACCGGTGGGATGAAG
+GTCAAACATCCAGCGGCTCTTGCTGCAGCTAGACGGGGGGGTATTCCGGTCGTGATAACG
+AAT
+>3 23ISL-consensus
+CAGGGTCTGGATAACGCTAATCGTTCGCTAGTTCGCGCTACAAAAGCAGAAAGTTCAGAT
+ATACGGAAAGAGGTGACTAACGGCATCGCTAAAGGGCTGAAGCTAGACAGTCTGGAAACA
+GCTGCAGAGTCGAAGAACTGCTCAAGCGCACAGAAAGGCGGATCGCTAGCTTGGGCAACC
+AACTCCCAACCACAGCCTCTCCGTGAAAGTAAGCTTGAGCCATTGGAAGACTCCCCACGT
+AAGGCTTTAAAAACACCTGTGTTGCAAAAGACATCCAGTACCATAACTTTACAAGCAGTC
+AAGGTTCAACCTGAACCCCGCGCTCCCGTCTCCGGGGCGCTGTCCCCGAGCGGGGAGGAA
+CGCAAGCGCCCAGCTGCGTCTGCTCCCGCTACCTTACCGACACGACAGAGTGGTCTAGGT
+TCTCAGGAAGTCGTTTCGAAGGTGGCGACTCGCAAAATTCCAATGGAGTCACAACGCGAG
+TCGACT

cypress/fixtures/prod_frag.txt

@@ -0,0 +1,34 @@
+>1 Homoserine_dh-consensus
+CCTATCATTTCGACGCTCAAGGAGTCGCTGACAGGTGACCGTATTACTCGAATCGAAGGG
+ATATTAAACGGCACCCTGAATTACATTCTCACTGAGATGGAGGAAGAGGGGGCTTCATTC
+TCTGAGGCGCTGAAGGAGGCACAGGAATTGGGCTACGCGGAAGCGGATCCTACGGACGAT
+GTGGAAGGGCTAGATGCTGCTAGAAAGCTGGCAATTCTAGCCAGATTGGCATTTGGGTTA
+GAGGTCGAGTTGGAGGACGTAGAGGTGGAAGGAATTGAAAAGCTGACTGCCGAAGATATT
+GAAGAAGCGAAGGAAGAGGGTAAAGTTTTAAAACTAGTGGCAAGCGCCGTCGAAGCCAGG
+GTCAAGCCTGAGCTGGTACCTAAGTCACATCCATTAGCCTCGGTAAAAGGCTCTGACAAC
+GCCGTGGCTGTAGAAACGGAACGGGTAGGCGAACTCGTAGTGCAGGGACCAGGGGCTGGC
+GCAGAGCCAACCGCATCCGCTGTACTCGCTGACCTTCTC
+>2 AA_kinase-consensus
+AAACGTGTAGTTGTAAAGCTTGGGGGTAGTTCTCTGACAGATAAGGAAGAGGCATCACTC
+AGGCGTTTAGCTGAGCAGATTGCAGCATTAAAAGAGAGTGGCAATAAACTAGTGGTCGTG
+CATGGAGGCGGCAGCTTCACTGATGGTCTGCTGGCATTGAAAAGTGGCCTGAGCTCGGGC
+GAATTAGCTGCGGGGTTGAGGAGCACGTTAGAAGAGGCCGGAGAAGTAGCGACGAGGGAC
+GCCCTAGCTAGCTTAGGGGAACGGCTTGTTGCAGCGCTGCTGGCGGCGGGTCTCCCTGCT
+GTAGGACTCAGCGCCGCTGCGTTAGATGCGACGGAGGCGGGCCGGGATGAAGGCAGCGAC
+GGGAACGTCGAGTCCGTGGACGCAGAAGCAATTGAGGAGTTGCTTGAGGCCGGGGTGGTC
+CCCGTCCTAACAGGATTTATCGGCTTAGACGAAGAAGGGGAACTGGGAAGGGGATCTTCT
+GACACCATCGCTGCGTTACTCGCTGAAGCTTTAGGCGCGGACAAACTCATAATACTGACC
+GACGTAGACGGCGTTTACGATGCCGACCCTAAAAAGGTCCCAGACGCGAGGCTCTTGCCA
+GAGATAAGTGTGGACGAGGCCGAGGAAAGCGCCTCCGAATTAGCGACCGGTGGGATGAAG
+GTCAAACATCCAGCGGCTCTTGCTGCAGCTAGACGGGGGGGTATTCCGGTCGTGATAACG
+AAT
+>3 23ISL-consensus
+CAGGGTCTGGATAACGCTAATCGTTCGCTAGTTCGCGCTACAAAAGCAGAAAGTTCAGAT
+ATACGGAAAGAGGTGACTAACGGCATCGCTAAAGGGCTGAAGCTAGACAGTCTGGAAACA
+GCTGCAGAGTCGAAGAACTGCTCAAGCGCACAGAAAGGCGGATCGCTAGCTTGGGCAACC
+AACTCCCAACCACAGCCTCTCCGTGAAAGTAAGCTTGAGCCATTGGAAGACTCCCCACGT
+AAGGCTTTAAAAACACCTGTGTTGCAAAAGACATCCAGTACCATAACTTTACAAGCAGTC
+AAGGTTCAACCTGAACCCCGCGCTCCCGTCTCCGGGGCGCTGTCCCCGAGCGGGGAGGAA
+CGCAAGCGCCCAGCTGCGTCTGCTCCCGCTACCTTACCGACACGACAGAGTGGTCTAGGT
+TCTCAGGAAGTCGTTTCGAAGGTGGCGACTCGCAAAATTCCAATGGAGTCACAACGCGAG
+TCGACT

cypress/fixtures/prod_gff.txt

@@ -0,0 +1,7 @@
+##gff-version 3
+##sequence-region Homoserine_dh-consensus 1 519
+Homoserine_dh-consensus	deciphon:0.1.0	CDS	1	519	285.981201171875	.	0	Epsilon=0.01;ID=1;Profile_acc=PF00742.20;Target_alph=dna
+##sequence-region AA_kinase-consensus 1 723
+AA_kinase-consensus	deciphon:0.1.0	CDS	1	723	343.647705078125	.	0	Epsilon=0.01;ID=2;Profile_acc=PF00696.29;Target_alph=dna
+##sequence-region 23ISL-consensus 1 486
+23ISL-consensus	deciphon:0.1.0	CDS	1	486	354.7095947265625	.	0	Epsilon=0.01;ID=3;Profile_acc=PF16620.6;Target_alph=dna

cypress/fixtures/prod_path.txt

@@ -0,0 +1,14 @@
+>1 Homoserine_dh-consensus
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+>2 AA_kinase-consensus
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+M
+>3 23ISL-consensus
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
+MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM

cypress/fixtures/scan_done.json

@@ -0,0 +1 @@
+{"id":9,"db_id":1,"multi_hits":true,"hmmer3_compat":false,"job_id":99}

cypress/fixtures/scan_failed.json

@@ -0,0 +1 @@
+{"id":13,"db_id":1,"multi_hits":true,"hmmer3_compat":false,"job_id":103}

cypress/fixtures/scan_new.json

@@ -0,0 +1,11 @@
+{
+  "id": 100,
+  "db_id": 0,
+  "multi_hits": false,
+  "hmmer3_compat": false,
+  "state": "done",
+  "error": "",
+  "submission": 0,
+  "exec_started": 0,
+  "exec_ended": 0
+}

cypress/fixtures/scan_pending.json

@@ -0,0 +1 @@
+{"id":10,"db_id":1,"multi_hits":true,"hmmer3_compat":false,"job_id":100}

cypress/fixtures/scan_running.json

@@ -0,0 +1 @@
+{"id":11,"db_id":1,"multi_hits":true,"hmmer3_compat":false,"job_id":101}