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Override dose with session parameters table value for eer fractionation #673

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Merged
stephen-riggs merged 1 commit into from
Oct 1, 2025
Merged

Override dose with session parameters table value for eer fractionation #673

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7 changes: 6 additions & 1 deletion src/murfey/server/api/file_io_instrument.py
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Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,7 @@ async def process_gain(

class FractionationParameters(BaseModel):
fractionation: int
dose_per_frame: float
dose_per_frame: Optional[float] = None
num_frames: int = 0
eer_path: Optional[str] = None
fractionation_file_name: str = "eer_fractionation.txt"
Expand Down Expand Up @@ -160,6 +160,7 @@ async def write_eer_fractionation_file(
)
).all()
if session_parameters:
fractionation_params.dose_per_frame = session_parameters[0].dose_per_frame
fractionation_params.fractionation = session_parameters[0].eer_fractionation
session_parameters[0].eer_fractionation_file = str(file_path)
db.add(session_parameters[0])
Expand All @@ -168,6 +169,10 @@ async def write_eer_fractionation_file(
if file_path.is_file():
return {"eer_fractionation_file": str(file_path)}

if not fractionation_params.dose_per_frame:
logger.error("EER fractionation dose not set")
return {"eer_fractionation_file": None}

if fractionation_params.num_frames:
num_eer_frames = fractionation_params.num_frames
elif (
Expand Down