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Removed unused table columns from CLEM PostgreSQL tables #430

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Merged
tieneupin merged 1 commit into from
Jan 9, 2025
Merged

Removed unused table columns from CLEM PostgreSQL tables #430

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9 changes: 0 additions & 9 deletions src/murfey/util/db.py
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Original file line number Diff line number Diff line change
Expand Up @@ -272,8 +272,6 @@ class CLEMImageSeries(SQLModel, table=True): # type: ignore
number_of_members: int = (
0 # Expected number of image stacks belonging to this series
)
images_aligned: bool = False # Have all members been aligned?
rgbs_created: bool = False # Have all members been colourised?
composite_created: bool = False # Has a composite image been created?
composite_image: Optional[str] = None # Full path to composite image

Expand Down Expand Up @@ -322,13 +320,6 @@ class CLEMImageStack(SQLModel, table=True): # type: ignore
default=None,
)

# Process checklist for each image
stack_created: bool = False # Verify that the stack has been created
image_aligned: bool = False # Verify that image alignment has been done on stack
aligned_image: Optional[str] = None # Full path to aligned image stack
rgb_created: bool = False # Verify that rgb image has been created
rgb_image: Optional[str] = None # Full path to colorised image stack


"""
TEM SESSION AND PROCESSING WORKFLOW
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2 changes: 0 additions & 2 deletions src/murfey/workflows/clem/register_preprocessing_results.py
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Expand Up @@ -120,7 +120,6 @@ def register_lif_preprocessing_result(
clem_img_stk.parent_lif = clem_lif_file
clem_img_stk.parent_series = clem_img_series
clem_img_stk.channel_name = result.channel
clem_img_stk.stack_created = True
db.add(clem_img_stk)
db.commit()
db.refresh(clem_img_stk)
Expand Down Expand Up @@ -309,7 +308,6 @@ def register_tiff_preprocessing_result(
clem_img_stk.associated_metadata = clem_metadata
clem_img_stk.parent_series = clem_img_series
clem_img_stk.channel_name = result.channel
clem_img_stk.stack_created = True
db.add(clem_img_stk)
db.commit()
db.refresh(clem_img_stk)
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