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Add columns for atlas/grid square colour channels #306

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Merged
gfrn merged 1 commit into from
Jan 12, 2026
Merged

Add columns for atlas/grid square colour channels #306

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41 changes: 41 additions & 0 deletions schemas/ispyb/updates/2026_01_05_GridSquare_Atlas_channels.sql
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Original file line number Diff line number Diff line change
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INSERT IGNORE INTO SchemaStatus (scriptName, schemaStatus) VALUES ('2026_01_05_GridSquare_Atlas_channels.sql ', 'ONGOING');

ALTER TABLE GridSquare
ADD hasRed boolean DEFAULT 0
COMMENT 'Whether region has red channel',
ADD hasBlue boolean DEFAULT 0
COMMENT 'Whether region has blue channel',
ADD hasGreen boolean DEFAULT 0
COMMENT 'Whether region has green channel',
ADD hasYellow boolean DEFAULT 0
COMMENT 'Whether region has yellow channel',
ADD hasCyan boolean DEFAULT 0
COMMENT 'Whether region has cyan channel',
ADD hasMagenta boolean DEFAULT 0
COMMENT 'Whether region has magenta channel',
ADD hasGrey boolean DEFAULT 0
COMMENT 'Whether region has grey channel',
ADD mode enum('Bright Field and Fluorescent', 'Bright Field', 'Fluorescent', 'Tomography', 'Single Particle')
COMMENT 'Collection mode',
ALGORITHM=INSTANT;

ALTER TABLE Atlas
ADD hasRed boolean DEFAULT 0
COMMENT 'Whether atlas has red channel',
ADD hasBlue boolean DEFAULT 0
COMMENT 'Whether atlas has blue channel',
ADD hasGreen boolean DEFAULT 0
COMMENT 'Whether atlas has green channel',
ADD hasYellow boolean DEFAULT 0
COMMENT 'Whether atlas has yellow channel',
ADD hasCyan boolean DEFAULT 0
COMMENT 'Whether atlas has cyan channel',
ADD hasMagenta boolean DEFAULT 0
COMMENT 'Whether atlas has magenta channel',
ADD hasGrey boolean DEFAULT 0
COMMENT 'Whether atlas has grey channel',
ADD mode enum('Bright Field and Fluorescent', 'Bright Field', 'Fluorescent', 'Tomography', 'Single Particle')
COMMENT 'Collection mode',
ALGORITHM=INSTANT;

UPDATE SchemaStatus SET schemaStatus = 'DONE' WHERE scriptName = '2026_01_05_GridSquare_Atlas_channels.sql';