Handle simultaneous update and deprecate/restore

[MJGaughran]

At the moment, if you update a Module's contents as well as deprecate or restore it, only the update takes effect on sync. This means that the compare command will fail the next time it is run, as the modulefile is not in the correct location.

This only needed a fix to validation as deploy was already capable of handling Modules that fell into more than one category.

When creating the tests, it was clear that some places used "active" and others "live" to refer to a non-deprecated module, so I have cleared this up.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.48%. Comparing base (4f5ee44) to head (08fde82).

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #79      +/-   ##
==========================================
- Coverage   99.48%   99.48%   -0.01%     
==========================================
  Files          27       27              
  Lines         979      978       -1     
==========================================
- Hits          974      973       -1     
  Misses          5        5              

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