yclade

A Python library to find the position on the human Y chromosome tree given a set of single nucleotide polymorphisms (SNPs).

Installation

pip install yclade

Usage

import yclade

snp_string = "M215+, BY61636-, FTF15749-, TY15744-"
yclade.find_clade(snp_string)

Command-line usage

python -m yclade "M215+, BY61636-, FTF15749-, TY15744-"

You can also use a file with the SNPs:

python -m yclade -f snps.txt

Credits

The Y tree data is from YFull and is shared under the Creative Commons Attribution 4.0 International Public License.

The code has been tested on SNP data obtained from YSEQ test results.

Inspiration has also been drawn from clade-finder.