Dev tilestitching #393
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Dev tilestitching #393
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Added utils to setup qupath and updated testcases.
Added jdk 17 installation and exclude testcases with "exclude" marker.
updated mamba
Added Jpype dependency
Added Jpype1
Updated openslide
Added testcase execution for tile_stitcher, and combining coverage files from two test case runs.
Excluded openjdk 8 dependency, as we are setting up jdk 17.
Added code to check and debug java versions.
Updated qupath downlod path
Changing priority of JVM to version 17
Removed duplicate code
Changing jdk priority to version 17
Running test case on tilestitcher.py
Combining coverage reports
Debug coverage command
Debug coverage pytest error
added shell command to run coverage using pytest
Modified coverage combine code
debug coverage combining
…DeepPatchFeatureExtractor
Remove torchvision dependency in tests and added nn.Module input for …
Added torchvision and spams
Make flake8 compliant and update tests
Updated environment.yml to include flexible numpy and scipy versions
Added capabilities for all possible versions of skimage and flake8 co…
Changes spams installation in github workflows
Updated skimage version for importing the graph module
sreekarreddydfci
merged commit 305f4e5
into
Dana-Farber-AIOS:dev-tilestitching
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