Skip to content

Commit

Permalink
Update index.md
Browse files Browse the repository at this point in the history
  • Loading branch information
VarunUllanat authored Nov 4, 2024
1 parent e8dbe47 commit c327410
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions index.md
Original file line number Diff line number Diff line change
Expand Up @@ -319,11 +319,11 @@ Now that you are all set with ``PathML`` installation, let's get started with so
6. [Train HoVer-Net model to perform nucleus detection and classification, using data from PanNuke dataset](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/train_hovernet.ipynb)
7. [Gallery of PathML preprocessing and transformations](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/pathml_gallery.ipynb)
8. [Use the new Graph API to construct cell and tissue graphs from pathology images](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/construct_graphs.ipynb)
9. [Train HACTNet model to perform cancer sub-typing using graphs constructed from the BRACS dataset]("https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/train_hactnet.ipynb")
10. [Perform reconstruction of tiles obtained from pathology images using Tile Stitching]("https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/tile_stitching.ipynb")
11. [Create an ONNX model in HaloAI or similar software, export it, and run it at scale using PathML]("https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/InferenceOnnx_tutorial.ipynb")
12. [Step-by-step process used to analyze the Whole Slide Images (WSIs) of Non-Small Cell Lung Cancer (NSCLC) samples as published in the Journal of Clinical Oncology]("https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/Graph_Analysis_NSCLC.ipynb")
13. [Talk to the PathML Digital Pathology Assistant]("https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/talk_to_pathml.ipynb")
9. [Train HACTNet model to perform cancer sub-typing using graphs constructed from the BRACS dataset](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/train_hactnet.ipynb)
10. [Perform reconstruction of tiles obtained from pathology images using Tile Stitching](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/tile_stitching.ipynb)
11. [Create an ONNX model in HaloAI or similar software, export it, and run it at scale using PathML](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/InferenceOnnx_tutorial.ipynb)
12. [Step-by-step process used to analyze the Whole Slide Images (WSIs) of Non-Small Cell Lung Cancer (NSCLC) samples as published in the Journal of Clinical Oncology](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/Graph_Analysis_NSCLC.ipynb)
13. [Talk to the PathML Digital Pathology Assistant](https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/talk_to_pathml.ipynb)
# 4. Citing & known uses
Expand Down

0 comments on commit c327410

Please sign in to comment.