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blobtools v0.9.19.4

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@DRL DRL released this 08 Sep 13:55
· 120 commits to master since this release

DOI

New feature

bamfilter : reads from a BAM file get filtered into different files:
- *InIn* : both reads of a pair are mapped to a contig in "include"
- *InUn*: One read of pair maps to contig in "include", the other is unmapped
- *UnUn*: both reads of a pair are unmapped
if list of contigs to "include"/"exclude" is supplied, additional files get created:
- *ExEx*: both reads of a pair are mapped to a contig in "exclude"
- *ExIn* : One read of pair maps to contig in "include", the other maps to contig in "exclude"
- *ExUn*: One read of pair maps to contig in "exclude", the other is unmapped