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conda_environment.yml
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name: human-metnet
channels:
- conda-forge
- r
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- alsa-lib=1.2.3=h516909a_0
- argon2-cffi=20.1.0=py38h497a2fe_2
- astroid=2.5.6=py38h578d9bd_0
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- blas=2.3=openblas
- bleach=3.3.0=pyh44b312d_0
- bokeh=2.3.1=py38h578d9bd_0
- boto3=1.17.59=pyhd8ed1ab_0
- botocore=1.20.59=pyhd8ed1ab_1
- bottleneck=1.3.2=py38h5c078b8_3
- brotlipy=0.7.0=py38h497a2fe_1001
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2020.12.5=ha878542_0
- certifi=2020.12.5=py38h578d9bd_1
- cffi=1.14.5=py38ha65f79e_0
- cftime=1.4.1=py38h5c078b8_0
- click=7.1.2=pyh9f0ad1d_0
- cloudpickle=1.6.0=py_0
- cryptography=3.4.7=py38ha5dfef3_0
- curl=7.76.1=h979ede3_1
- cytoolz=0.11.0=py38h497a2fe_3
- dask=2021.4.1=pyhd8ed1ab_0
- dask-core=2021.4.1=pyhd8ed1ab_0
- dbus=1.13.6=h48d8840_2
- decorator=4.4.2=py_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- distributed=2021.4.1=py38h578d9bd_0
- entrypoints=0.3=pyhd8ed1ab_1003
- et_xmlfile=1.0.1=py_1001
- expat=2.3.0=h9c3ff4c_0
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- fsspec=2021.4.0=pyhd8ed1ab_0
- gettext=0.19.8.1=h0b5b191_1005
- glib=2.68.1=h9c3ff4c_0
- glib-tools=2.68.1=h9c3ff4c_0
- gst-plugins-base=1.18.4=hf529b03_2
- gstreamer=1.18.4=h76c114f_2
- hdf4=4.2.13=h10796ff_1005
- hdf5=1.10.6=nompi_h7c3c948_1111
- heapdict=1.0.1=py_0
- icu=68.1=h58526e2_0
- importlib-metadata=4.0.1=py38h578d9bd_0
- importlib_metadata=4.0.1=hd8ed1ab_0
- intel-openmp=2021.2.0=h06a4308_610
- ipykernel=5.5.3=py38hd0cf306_0
- ipython=7.22.0=py38hd0cf306_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.6.3=pyhd3deb0d_0
- isort=5.8.0=pyhd8ed1ab_0
- jdcal=1.4.1=py_0
- jedi=0.18.0=py38h578d9bd_2
- jinja2=2.11.3=pyh44b312d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter=1.0.0=py38h578d9bd_6
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_console=6.4.0=pyhd8ed1ab_0
- jupyter_core=4.7.1=py38h578d9bd_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
- krb5=1.17.2=h926e7f8_0
- lazy-object-proxy=1.6.0=py38h497a2fe_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=3_openblas
- libcblas=3.9.0=3_openblas
- libclang=11.1.0=default_ha53f305_0
- libcurl=7.76.1=hc4aaa36_1
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_19
- libgfortran-ng=7.5.0=h14aa051_19
- libgfortran4=7.5.0=h14aa051_19
- libglib=2.68.1=h3e27bee_0
- libgomp=9.3.0=h2828fa1_19
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=3_openblas
- liblapacke=3.9.0=3_openblas
- libllvm10=10.0.1=he513fc3_3
- libllvm11=11.1.0=hf817b99_2
- libnetcdf=4.8.0=nompi_hfa85936_101
- libnghttp2=1.43.0=h812cca2_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=h21135ba_2
- libpq=13.2=hfd2b0eb_2
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_19
- libtiff=4.2.0=hdc55705_1
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.10=h72842e0_4
- libzip=1.7.3=h4de3113_0
- llvm-openmp=11.1.0=h4bd325d_1
- llvmlite=0.36.0=py38h4630a5e_0
- locket=0.2.0=py_2
- lz4-c=1.9.3=h9c3ff4c_0
- markupsafe=1.1.1=py38h497a2fe_3
- mccabe=0.6.1=py_1
- mistune=0.8.4=py38h497a2fe_1003
- mkl=2020.4=h726a3e6_304
- mkl-service=2.3.0=py38h1e0a361_2
- mkl_fft=1.3.0=py38h5c078b8_1
- mkl_random=1.2.0=py38hc5bc63f_1
- msgpack-python=1.0.2=py38h1fd1430_1
- mysql-common=8.0.23=ha770c72_1
- mysql-libs=8.0.23=h935591d_1
- nbclient=0.5.3=pyhd8ed1ab_0
- nbconvert=6.0.7=py38h578d9bd_3
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- netcdf4=1.5.6=nompi_py38h5e9db54_103
- networkx=2.5.1=pyhd8ed1ab_0
- notebook=6.3.0=pyha770c72_1
- nspr=4.30=h9c3ff4c_0
- nss=3.64=hb5efdd6_0
- numba=0.53.1=py38h0e12cce_0
- numpy=1.20.2=py38h9894fe3_0
- numpy-base=1.18.5=py38h2f8d375_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hf7af979_0
- openpyxl=3.0.7=pyhd8ed1ab_0
- openssl=1.1.1k=h7f98852_0
- packaging=20.9=pyh44b312d_0
- pandoc=2.12=h7f98852_0
- pandocfilters=1.4.2=py_1
- parso=0.8.2=pyhd8ed1ab_0
- partd=1.2.0=pyhd8ed1ab_0
- pcre=8.44=he1b5a44_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.1.2=py38ha0e1e83_1
- pip=21.1=pyhd8ed1ab_0
- prometheus_client=0.10.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.18=pyha770c72_0
- prompt_toolkit=3.0.18=hd8ed1ab_0
- psutil=5.8.0=py38h497a2fe_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.8.1=pyhd8ed1ab_0
- pylint=2.7.2=py38h578d9bd_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py38h578d9bd_7
- pyqt-impl=5.12.3=py38h7400c14_7
- pyqt5-sip=4.19.18=py38h709712a_7
- pyqtchart=5.12=py38h7400c14_7
- pyqtwebengine=5.12.1=py38h7400c14_7
- pyrsistent=0.17.3=py38h497a2fe_2
- pysocks=1.7.1=py38h578d9bd_3
- python=3.8.8=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.8=1_cp38
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.4.1=py38h497a2fe_0
- pyzmq=22.0.3=py38h2035c66_1
- qt=5.12.9=hda022c4_4
- qtconsole=5.0.3=pyhd8ed1ab_0
- qtpy=1.9.0=py_0
- readline=8.1=h46c0cb4_0
- s3transfer=0.4.2=pyhd8ed1ab_0
- scikit-learn=0.24.1=py38h658cfdd_0
- scipy=1.5.3=py38h828c644_0
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py38h578d9bd_3
- sip=4.19.25=py38h709712a_0
- six=1.15.0=pyh9f0ad1d_0
- sortedcontainers=2.3.0=pyhd8ed1ab_0
- sqlite=3.35.5=h74cdb3f_0
- tbb=2020.2=h4bd325d_4
- tblib=1.7.0=pyhd8ed1ab_0
- terminado=0.9.4=py38h578d9bd_0
- testpath=0.4.4=py_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=h21135ba_1
- toml=0.10.2=pyhd8ed1ab_0
- toolz=0.11.1=py_0
- tornado=6.1=py38h497a2fe_1
- traitlets=5.0.5=py_0
- typing_extensions=3.7.4.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- widgetsnbextension=3.5.1=py38h578d9bd_4
- wrapt=1.12.1=py38h497a2fe_3
- xarray=0.17.0=pyhd8ed1ab_0
- xlrd=2.0.1=pyhd8ed1ab_3
- xlsxwriter=1.4.0=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- zeromq=4.3.4=h9c3ff4c_0
- zict=2.0.0=py_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- aiohttp==3.7.3
- aiohttp-cors==0.7.0
- aioredis==1.3.1
- appdirs==1.4.4
- async-timeout==3.0.1
- blessings==1.7
- cachetools==4.2.1
- chardet==3.0.4
- cobra==0.21.0
- colorama==0.4.4
- colorful==0.5.4
- commonmark==0.9.1
- depinfo==1.7.0
- diskcache==5.2.1
- filelock==3.0.12
- google-api-core==1.26.0
- google-auth==1.25.0
- googleapis-common-protos==1.52.0
- gpustat==0.6.0
- grpcio==1.35.0
- h11==0.12.0
- hiredis==1.1.0
- httpcore==0.12.3
- httpx==0.16.1
- idna==2.10
- importlib-resources==5.1.0
- mpmath==1.2.1
- multidict==5.1.0
- nvidia-ml-py3==7.352.0
- opencensus==0.7.12
- opencensus-context==0.1.2
- optlang==1.4.4
- pandas==1.2.2
- protobuf==3.14.0
- py-spy==0.3.4
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pydantic==1.7.3
- python-libsbml==5.19.0
- ray==1.1.0
- redis==3.5.3
- requests==2.25.1
- rfc3986==1.4.0
- rich==6.2.0
- rsa==4.7
- ruamel-yaml==0.16.12
- ruamel-yaml-clib==0.2.2
- sniffio==1.2.0
- swiglpk==4.65.1
- sympy==1.7.1
- urllib3==1.26.3
- yarl==1.6.3
prefix: /home/manu/miniconda/envs/human-metnet