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Microbial interactions shape cheese flavor formation
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@franciscozorrilla franciscozorrilla released this 05 Jan 10:58
· 4 commits to main since this release
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Updated code and data accompanying the manuscript Microbial interactions shape cheese flavor formation

Data

  • Replace old models (gapfilled on milk) with updated models sets gapfilled on each media variation + no gapfilling (699c122)
├── data
│   ├── Models
│   │   ├── LC.xml
│   │   ├── LLm1.xml
│   │   ├── LLm2.xml
│   │   ├── ST.xml

Code

  • Add helper scripts (935dfb7):

    • model_summary_generate.py to read models and produce individual summaries
    • model_summary_compile.sh script to compile individual summary files into model_summary.tsv file
    • gf_rxns_compile.sh to read through models and extract gapfilled reaction information into gf_rxns.tsv file
Assets 2
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