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Build HDF5 2.x #108

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31801af
#106 Use cmake for HDF5 2+
kwabenantim May 13, 2026
983d0d6
#106 Update hdf5 2.x links
kwabenantim May 13, 2026
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54 changes: 37 additions & 17 deletions scripts/custom/install_hdf5.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -85,13 +85,17 @@ elif (version_ge "${version}" '1.12.2' && version_lt "${version}" '1.12.4') ||
wget -nc https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5-${ver_si_on}.tar.gz
tar -xzf hdf5-${ver_si_on}.tar.gz -C ${src_dir} --strip-components=1

else
# HDF5 >=1.10.12, <1.11
# HDF5 >=1.12.4, <1.13
# HDF5 >=1.14.4, <1.15
# + catch-all
elif (version_ge "${version}" '1.10.12' && version_lt "${version}" '1.11') || # HDF5 >=1.10.12, <1.11
(version_ge "${version}" '1.12.4' && version_lt "${version}" '1.13') || # HDF5 >=1.12.4, <1.13
(version_ge "${version}" '1.14.4' && version_lt "${version}" '1.15'); then # HDF5 >=1.14.4, <1.15
wget -nc https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5_${version}.tar.gz
tar -xzf hdf5_${version}.tar.gz -C ${src_dir} --strip-components=1

else
# HDF5 >=2.0.0
# + catch-all
wget -nc https://github.com/HDFGroup/hdf5/archive/refs/tags/${version}.tar.gz
tar -xzf ${version}.tar.gz -C ${src_dir} --strip-components=1
fi

# Build and install
Expand All @@ -100,18 +104,34 @@ mkdir -p ${install_dir}

cd ${src_dir}

./configure \
--prefix=${install_dir} \
--enable-parallel \
--enable-shared \
CFLAGS=-fPIC \
LDFLAGS=-fPIC \
CPPFLAGS=-fPIC \
CXXFLAGS=-fPIC \
CC=mpicc \
CXX=mpic++ &&
make -j $parallel all &&
make install
if version_lt "${version}" '2.0.0'; then # HDF5 < 2.0.0
./configure \
--prefix=${install_dir} \
--enable-parallel \
--enable-shared \
CFLAGS=-fPIC \
LDFLAGS=-fPIC \
CPPFLAGS=-fPIC \
CXXFLAGS=-fPIC \
CC=mpicc \
CXX=mpic++ &&
make -j $parallel all &&
make install

else # HDF5 >= 2.0.0
CC=mpicc CXX=mpic++ cmake \
-DCMAKE_BUILD_SHARED_LIBS=ON \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=${install_dir} \
-DHDF5_BUILD_HL_LIB=ON \
-DHDF5_BUILD_TOOLS=OFF \
-DHDF5_ENABLE_PARALLEL=ON \
-DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
-DHDF5_ENABLE_SZIP_SUPPORT=ON \
-DHDF5_ENABLE_UNSUPPORTED=OFF .. &&
make -j ${parallel} &&
make install
fi

# Add modulefile
mkdir -p ${base_dir}/modulefiles/hdf5
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