Fix to allow to run on 3d images #284
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emiglietta
commented
Aug 13, 2025
emiglietta
commented
- Adds a new parameter to be passed to the Cellpose call when running on volumetric images: `z_axiz'
- Allows volumetric display
- Avoids showind outlines when doing volumetric display to escape shape mismatch error (third panel still shows the raw image but without outlines)
this setting errors if display is enabled bc display does not currently support 3d, but the module does run
this works but outline display still fails bc os shape mismatch
otherwise there is a shape mismatch error. The third panel still shows the original image, but without the outlines
bethac07
approved these changes
Aug 14, 2025
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