Release seqproc 0.1.0 - #22

Merged

rob-p merged 65 commits into

mainfrom

Aug 22, 2026

Commits on Aug 20, 2026

Add versioned EFGDL headers and BLAKE3 provenance
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e1bed15
Add fixed output and FASTQ header templates
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576fd54
Document EFGDL 2 capabilities
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8b1fbf0
Optimize conditional terminal projections
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fae0dfe
Freeze processing graphs before execution
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13a3e10
Adopt direct terminal rendering
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77f58b1
Temporarily deploy docs from dev
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Deploy dev docs through temporary environment
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26dfd01
Restore production-only docs deployment
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b461de4

Commits on Aug 21, 2026

Adopt optimized long-read branching backend
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b6c4995
Expose graph optimization and execution plans
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83a9844
Add complex protocol layout and matcher controls
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29b6bc5
Complete EFGDL 2 complex protocol semantics
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dd4a3cc
Fix layout choice table rendering
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91b75d5
Add post-release development roadmap
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cd2b609
Add named EFGDL resource bindings
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6a43b18
Mark named resources milestone complete
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28ad4ac
Add grouped FASTQ shard inputs
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271e117
Mark FASTQ shard milestone complete
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accb4b3
Add typed stdin and stdout FASTQ streams
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dddea38
Mark stream I/O milestone complete
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30e763c
Add geometry-driven interleaved FASTQ input
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Mark interleaved input milestone complete
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Add bounded three-segment FASTQ support
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8f9cd35
Mark three-segment milestone complete
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f3adf18
Introduce typed seqproc error contract
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76fa2a8
Mark typed errors milestone complete
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fc98fd3
Expose proof-backed optimizer passes
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92b1cda
Mark optimizer passes milestone complete
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Add deterministic dynamic batch planning
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0a5ff38
Mark batch planning milestone complete
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78fd336
Plan reference interpreter and fuzzing milestone
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cdc2084
Document first release review handoff
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e967c51
Fix positional anchor_set references and validate distances at compile time

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claude
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1fca512
Add --version and tolerate non-UTF-8 arguments

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claude
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6b6da77
Require main branch for release tagging

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claude
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c49a90e
Pin ANTISEQUENCE review-fix revision

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claude
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2d404c8
Document first release review report

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ac59e76

Commits on Aug 22, 2026

Resolve first-release review findings
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Record reviewed release-candidate heads
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78a5d72
Define architecture-tuned release artifacts
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Record tuned release verification
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ae85b43
Pin CI-clean ANTISEQUENCE SIMD revision
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85c3d21
Record CI-clean release pins
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b10235d
Pin final ANTISEQUENCE release review head
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4e0de31
Record final architecture release revisions
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fa9a34a
Prepare final independent release re-review
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0ac29a7
Record final independent re-review

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claude
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73e4ca9
Pin ANTISEQUENCE positional-oracle and tie-resolution fix

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b455a7b
Document resolution of re-review blockers 6 and 7

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5ceae31
Resolve final first-release review blockers
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2c26678
Complete final pre-tag release review actions
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770499d
Keep portable SIMD builds compatible with cargo-dist
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388777b
Close second-pass output-topology and provenance findings

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9ed2d87
Pin ANTISEQUENCE finalization-lifecycle revision

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Record final release-readiness assessment

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d769a2e
Finalize second-pass release review evidence
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e3eafa0
Correct demultiplexed output provenance
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Document final demux provenance correction
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Record final hosted correction gates
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ebf8aa3
Confirm final demux-provenance correction

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claude
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7a07251
Handle stdout pipe closure as successful termination
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Document final release policy decisions
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Build Apple ARM releases on macOS 15
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00b9b32
Use published ANTISEQUENCE 0.1.0
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df0dea1