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pulsar hosts cleanup #20

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14 changes: 6 additions & 8 deletions group_vars/pulsarservers.yml
Original file line number Diff line number Diff line change
@@ -1,3 +1,8 @@
drmaa_version: 1.0.19
pbs_server: pbs-m1.metacentrum.cz
install_nfs_conda: false

# only galaxyproject.pulsar role vars below
pulsar_root: /opt/pulsar
pulsar_package_version: "0.15.6"
pulsar_network_homedir: "/storage/{{ pulsar.nfs_home }}/home/{{ pulsar.user_name }}"
@@ -21,13 +26,7 @@ pulsar_systemd_environment:
- DRMAA_LIBRARY_PATH="/opt/drmaa/lib/libdrmaa.so"
pulsar_systemd_service_options:
LimitNOFILE: 100000 # DEMON: This settings is pulsar-re specific, but could be usefull in general

drmaa_version: 1.0.19
pbs_server: pbs-m1.metacentrum.cz
install_nfs_conda: false

pulsar_create_user: false

pulsar_optional_dependencies:
- pyOpenSSL
# For remote transfers initiated on the Pulsar end rather than the Galaxy end
@@ -40,7 +39,6 @@ pulsar_optional_dependencies:
# psutil and pylockfile are optional dependencies but can make Pulsar more robust in small ways.
- psutil
- pylockfile

pulsar_yaml_config:
staging_directory: "{{ pulsar_staging_dir }}"
persistence_directory: "{{ pulsar_persistence_dir }}"
@@ -53,7 +51,7 @@ pulsar_yaml_config:
amqp_publish_retry_interval_start: 10
amqp_publish_retry_interval_step: 10
amqp_publish_retry_interval_max: 60

## DEMON: this setting is specific for RE Galaxy and pulsar-re cause usegalaxy.cz and galaxy-umsa depends only on singu;arity images
#
## We also need to create the dependency resolvers configuration so pulsar knows how to find and install dependencies
38 changes: 0 additions & 38 deletions host_vars/cloud255-47.cerit-sc.cz/secret.yml

This file was deleted.

16 changes: 0 additions & 16 deletions host_vars/cloud255-47.cerit-sc.cz/vars.yml

This file was deleted.

10 changes: 0 additions & 10 deletions hosts.yml
Original file line number Diff line number Diff line change
@@ -1,11 +1,5 @@
# define for all our hosts
# expected to run ansible-playbook ... --limit HOSTNAME


nometapuppet:
hosts:
cloud255-47.cerit-sc.cz: # ljochuv pulsar
ansible_user: debian
pulsar-qa1.galaxy.cloud.e-infra.cz:
ansible_user: debian
pulsar-qa2.galaxy.cloud.e-infra.cz:
@@ -17,8 +11,6 @@ pulsarservers:
ansible_user: debian
pulsar-qa2.galaxy.cloud.e-infra.cz:
ansible_user: debian
cloud255-47.cerit-sc.cz: # ljochuv pulsar
ansible_user: debian
pulsar-umsa.grid.cesnet.cz:
ansible_user: debian
pulsar-re.grid.cesnet.cz:
@@ -27,5 +19,3 @@ pulsarservers:
ansible_user: debian
pulsar-eu.grid.cesnet.cz:
ansible_user: root
mu-pub-245-66.flt.openstack.cloud.e-infra.cz:
ansible_user: debian
5 changes: 2 additions & 3 deletions pulsar.yml
Original file line number Diff line number Diff line change
@@ -9,7 +9,6 @@
golang_gopath: '/opt/workspace-go'
singularity_version: "3.7.4"
singularity_go_path: "{{ golang_install_dir }}"
pbs_drmaa_version: "1.0.19"

# Miniconda settings
miniconda_prefix: "{{ pulsar_network_homedir }}/conda"
@@ -75,12 +74,12 @@
recurse: yes
mode: 'a+x'
become: yes
become_user: "{{ pulsar.user_name }}"
become_user: "{{ pulsar.user_name }}"
- name: Creates entry in crontab "tmpreaper call in staging dir"
ansible.builtin.cron:
name: "tmpreaper in staging dir"
minute: "7"
hour: "*/6"
hour: "*/6"
job: "/usr/sbin/tmpreaper --verbose=0 --showdeleted --all --mtime --mtime-dir --runtime=600 {{ pulsar_cleanup_delay }} {{ pulsar_staging_dir }} >> {{ pulsar_cleanup_dir }}/cleaning_pulsar_files.log"
become: yes
become_user: "{{ pulsar.user_name }}"