[UPDATE] configs info

BioSystemsUM · Feb 12, 2025 · 2da3c43 · 2da3c43
1 parent 20ed20b
commit 2da3c43
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Showing 8 changed files with 17 additions and 39 deletions.
diff --git a/examples/config_files/ES.yaml b/examples/config_files/ES.yaml
@@ -1,6 +1,6 @@
 exp_name: "ES_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
+init_pop_path: "data/seed_compounds.csv"
 init_pop_size: 100
 standardize: True
 
@@ -11,4 +11,4 @@ generations: 100
 algorithm: "ES"
 elitist: True
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/GA.yaml b/examples/config_files/GA.yaml
@@ -1,7 +1,7 @@
 exp_name: "GA_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
-init_pop_size: 100
+init_pop_path: "data/seed_compounds.csv"
+init_pop_size: 11
 standardize: True
 
 max_rules_by_iter: 22949
@@ -10,4 +10,4 @@ tolerance: 0.1
 generations: 100
 algorithm: "GA"
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/IBEA.yaml b/examples/config_files/IBEA.yaml
@@ -1,6 +1,6 @@
 exp_name: "IBEA_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
+init_pop_path: "data/seed_compounds.csv"
 init_pop_size: 100
 standardize: True
 
@@ -11,4 +11,4 @@ generations: 100
 algorithm: "IBEA"
 kappa: 1.0
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/LS.yaml b/examples/config_files/LS.yaml
diff --git a/examples/config_files/NSGAII.yaml b/examples/config_files/NSGAII.yaml
@@ -1,13 +1,13 @@
 exp_name: "NSGAII_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
-init_pop_size: 100
+init_pop_path: "data/seed_compounds.csv"
+init_pop_size: 11
 standardize: True
 
 max_rules_by_iter: 22949
 tolerance: 0.1
 
-generations: 100
+generations: 10
 algorithm: "NSGAII"
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/NSGAIII.yaml b/examples/config_files/NSGAIII.yaml
@@ -1,6 +1,6 @@
 exp_name: "NSGAIII_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
+init_pop_path: "data/seed_compounds.csv"
 init_pop_size: 100
 standardize: True
 
@@ -10,4 +10,4 @@ tolerance: 0.1
 generations: 100
 algorithm: "NSGAIII"
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/SA.yaml b/examples/config_files/SA.yaml
@@ -1,6 +1,6 @@
 exp_name: "SA_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
+init_pop_path: "data/seed_compounds.csv"
 init_pop_size: 100
 standardize: True
 
@@ -13,4 +13,4 @@ temperature: 1.0
 minimum_temperature: 0.000001
 alpha: 0.95
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"
diff --git a/examples/config_files/SPEA2.yaml b/examples/config_files/SPEA2.yaml
@@ -1,6 +1,6 @@
 exp_name: "SPEA2_EXAMPLE_CONFIG"
 
-init_pop_path: ".../.../path_to_seed_compounds.tsv"
+init_pop_path: "data/seed_compounds.csv"
 init_pop_size: 100
 standardize: True
 
@@ -10,4 +10,4 @@ tolerance: 0.1
 generations: 100
 algorithm: "SPEA2"
 
-output_path: ".../output_dir_path/"
+output_path: "output_dir_path/"