[FIX] dependency + [ADD] disclaimer

BioSystemsUM · Dec 18, 2024 · 2fb0657 · 2fb0657
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Showing 6 changed files with 14 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -111,6 +111,10 @@ docker pull biosystemsum/deepmol
 
 If you’d like to use the GPU, make sure to install the versions of TensorFlow and DGL that match the CUDA drivers for your hardware.
 
+Do not install JAX, it will result dependency conflicts. 
+
+Loading tensorflow models will be problematic for MacOS users due to a known tensorflow issue [46](https://github.com/keras-team/tf-keras/issues/46).
+
 
 ## Getting Started
 

diff --git a/README_pypi.md b/README_pypi.md
@@ -84,6 +84,9 @@ docker pull biosystemsum/deepmol
 
 If you’d like to use the GPU, make sure to install the versions of TensorFlow and DGL that match the CUDA drivers for your hardware.
 
+Do not install JAX, it will result dependency conflicts. 
+
+Loading tensorflow models will be problematic for MacOS users due to a known tensorflow issue [46](https://github.com/keras-team/tf-keras/issues/46).
 
 ## Getting Started
 

diff --git a/docs/deepmol_docs/installation.md b/docs/deepmol_docs/installation.md
@@ -63,4 +63,8 @@ docker pull biosystemsum/deepmol
 
 ### Disclaimer
 
-If you’d like to use the GPU, make sure to install the versions of TensorFlow and DGL that match the CUDA drivers for your hardware.
+If you’d like to use the GPU, make sure to install the versions of TensorFlow and DGL that match the CUDA drivers for your hardware.
+
+Do not install JAX, it will result dependency conflicts. 
+
+Loading tensorflow models will be problematic for MacOS users due to a known tensorflow issue [46](https://github.com/keras-team/tf-keras/issues/46).
diff --git a/extra-requirements.txt b/extra-requirements.txt
@@ -8,7 +8,6 @@ cached_property==1.5.2: preprocessing, deep-learning, machine-learning, test
 numpy==1.23.5: preprocessing, deep-learning, machine-learning, test
 dill==0.3.6: preprocessing, deep-learning, machine-learning, test
 shap==0.44.0: deep-learning, machine-learning
-gensim==4.2.0: preprocessing, deep-learning, machine-learning
 IPython: preprocessing, deep-learning, machine-learning
 imblearn: preprocessing, machine-learning, deep-learning
 umap-learn==0.5.1: machine-learning, deep-learning

diff --git a/setup.cfg b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = deepmol
-version = 1.1.7
+version = 1.1.8
 description = DeepMol: a python-based machine and deep learning framework for drug discovery
 keywords = machine-learning, deep-learning, cheminformatics, drug-discovery
 author = DeepMol Team

diff --git a/src/deepmol/__init__.py b/src/deepmol/__init__.py
@@ -1,2 +1,2 @@
 
-__version__ = '1.1.7'
+__version__ = '1.1.8'