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* Occurrence Mapping: Adjust SQL to relax enforcement of link to taxon thesaurus, thus to include records with coordinates but lacking thesaurus relationship * Styling: Various styling, spacing, and display adjustments * Occurrence search: add type attribute to buttons to avoid defaulting as submit buttons * Occurrence Profile: Fix error triggered when otherCatalogNumbers are used to create backlink to original snapshot record within external institution web resource * Occurrence editing functions -- Fix fatal error triggered by cloning an occurrence record with the create association option selected -- Fix fatal error triggered when quick association feature is activated within occurrence editor -- Fix fatal error when deleting an occurrence when the occurrence was previously deleted (e.g. record already in omoccurarchive) -- Adjust occurrence restore option to dynamically determine associationType when restoring a record that was deleted prior to this field being added as a required input -- If resource association does not have an objectID, use url as the display text * Taxonomy editor: bug fix triggered by adding a child directly to the root node of the thesaurus (e.g. kingdom) * Scientific name parsing utility functions: Integrate cleanInfra function directly into code. It served no purpose being separate, and was also causing a bug where parent authors were being incorrectly merged with insfraspecific authors --------- Co-authored-by: Katie Pearson <[email protected]> Co-authored-by: Mark <[email protected]> Co-authored-by: MuchQuak <[email protected]> Co-authored-by: Logan Wilt <[email protected]>
* Occurrence Mapping: Adjust SQL to relax enforcement of link to taxon thesaurus, thus to include records with coordinates but lacking thesaurus relationship * Styling: Various styling, spacing, and display adjustments * Occurrence search: add type attribute to buttons to avoid defaulting as submit buttons * Occurrence Profile: Fix error triggered when otherCatalogNumbers are used to create backlink to original snapshot record within external institution web resource * Occurrence editing functions -- Fix fatal error triggered by cloning an occurrence record with the create association option selected -- Fix fatal error triggered when quick association feature is activated within occurrence editor -- Fix fatal error when deleting an occurrence when the occurrence was previously deleted (e.g. record already in omoccurarchive) -- Adjust occurrence restore option to dynamically determine associationType when restoring a record that was deleted prior to this field being added as a required input -- If resource association does not have an objectID, use url as the display text * Taxonomy editor: bug fix triggered by adding a child directly to the root node of the thesaurus (e.g. kingdom) * Scientific name parsing utility functions: Integrate cleanInfra function directly into code. It served no purpose being separate, and was also causing a bug where parent authors were being incorrectly merged with insfraspecific authors --------- Co-authored-by: Katie Pearson <[email protected]> Co-authored-by: Mark <[email protected]> Co-authored-by: MuchQuak <[email protected]> Co-authored-by: Logan Wilt <[email protected]>
# Summary Removed fixed hieght of selects in occurrence editor so it fits to the body text size appropriately
…lic record (#1762) * separated determiner and date determined * changed the text
- Replace deprecated utf8_encode with mb_detect_encoding
Checklist Management dev
3.1.2 Release: Merge Master Branch into Development after Hotfix release
Fix issue with Chrome autocomplete. See BioKIC/symbiota-docs#633.
- the $this->encodeArr() function receives input array by reference, which means it returns nothing (null)
* Utility Class Refactor - Move OccurrenceUtility and UuidFactory into new utilities directory - Remap class import to new location - Remove non-static functions from UuidFactory into new GuidManager class - Remap GUID manager functions to new class - Convert UtilityFunctions class to GeneralUtilities placed within utilities directory - Remove getDomain from Manager class - Remap Manager->getDomain() to GeneralUtilities::getDomain() - Move TaxonomyUtilities into utilities directory and remap all function calls to new location - Rename SymbUtil to QueryUtil and move into /classes/utilties/ directory - Move and remap Encoding class into /classes/utilities/ directory - Move and remap Encryption class into /classes/utilities/ directory - Move and remap RdfUtilities class into /classes/utilities/ directory - Move and remap SpecProcNlpUtilities class into /classes/utilities/ directory -Standardize utility file naming
- DwC-A Publishing: $this->encodeArr() function receives input array by reference, which means it returns nothing (null) - Minor error in Glossary and Media tools
add prepared statement to getOccurrenceArr
Styling correction to map index top menu
* Add lang files for exsiccati batch import * Add lang files for exsiccati/index * Add es and fr exsiccatae pages * Adjustments * add pt to batch import exsiccati * add pt translation to exisccati/index * Update batchimport.pt.php * Update index.pt.php --------- Co-authored-by: MuchQuak <[email protected]>
* Finish lang tags for editor/rpc - Combined all the lang tags in this folder into a single lang tag file (short) * Add lang tags to editor/tools
Issue is so solve when their is over lapping markers of different groups, ie would not get clustered.
* Inventory Project updates - Update sanitation of input and output variables - Complete internalization -- Update import of language terms -- Add missing LANG tags and remove tags not referenced -- Translate French that were entered in English - Remove deprecated code
* only add star in edit mode * respond to QA feedback * remove cruft
- Add functions that evaluates index and constraint statement fragments and compares them against database to ensure statements will not fail. Otherwise, they are pruned out and logged.
- Fix errors testing column existence within ALTER TABLE statements - Improve error handling
Schema Adjustments
- Re-add statements that got pruned out
Print errors from buildHierarchyEnumTree during taxonomy upload
add missing table name. Resolves #2219
- Maps to new location for query utility static function - Resolves issue #2229
SymbUtil bug
Minor crowdsource adjustments
* fix bug where points array was null * begin to implement exsiccati endpoint * fix bug from PR 2198 and update api docs * auto-format TaxonomyController.php * remove this change that should not be here * Update symbbase.php Update version * change exsiccati -> exsiccata * Update api-docs.json Trim out taxonomy description out of the documentation since they currently are not working --------- Co-authored-by: Edward Gilbert <[email protected]>
- Schema installer can't handle the modification of an index when it is both dropped and added within the same ALTER TABLE statement. Thus, I separated the lines into two different statements. - Explicitly define new tables using the INNODB db engine
Add logic to handle presence of ds.datasetid in setSqlJoins function Co-authored-by: Mark <[email protected]>
* add thumbnail code back in for media * remove commented-out code
* Swap openMapPopup function on taxon profile page to open to taxon search * Open with menu closed by default when coming from taxon profile page * Remove deprecated map files * remove associated lang files with deprecated map files
Fixes errant UTF character and restores variable reference
- Remove sort from update statements
* fixed the field names for media query * set the empty values to NULL for media query
Add indexes to media table for following columns that are commonly used within SQL conditions: sortSequence, sortOccurrence, thumbnailUrl, mediaType
- Adjust position of new fields
* add pagination to datasetmanager.php * add translations * remove cruft * checkout Development versions of checklists/checklist.php and collections/listtabledisplay.php * remove more cruft and simplify * begin to implement jump to page in large paginators * move the start of the form * add styling to make one line and handle logic for which pages to display a little better * combine sliding window with ensuring end and beginning always show * add media queries and other styling changes * add responsive design * clean up cruft * make slight logic improvement * add intermediate number of page links by getting rid of even page number links * handle first and last page links and extra | symbols * change sql queries such that they use QueryUtil::executeQuery * autoformat classes/OccurrenceDataset.php because it is unlikely to have been touched
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