Unify eFP schema + gene ID validation with combined_master.json - #328

Merged

asherpasha merged 38 commits into

BioAnalyticResource:devfrom

rmobmina:feature/reena-steven-integrated-endpoint

Aug 31, 2026

Commits on Jun 25, 2026

Add eFP/ePlant gene ID validation, microarray probeset support, and master DB list
rmobmina
committed
aa56b67

Commits on Jul 17, 2026

Integrate Vincent's regex registry, fix master JSON species, refactor endpoints to use it
rmobmina
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a577ee3
Remove scratch CSVs, MDs, and one-off analysis files from repo root
rmobmina
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afd8c63

Commits on Jul 23, 2026

Commits on Jul 27, 2026

Commits on Jul 28, 2026

Clean up PR: drop local ePlant XML data, fold master_data_utils into bar_utils, and scope build-script exclusions to .git/info/exclude
rmobmina
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f158077

Commits on Jul 30, 2026

Add api/random_rows_json/ fallback dataset for local eFP seed queries
rmobmina
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e7c5f96

Commits on Aug 5, 2026

Commits on Aug 6, 2026

Address PR 328 review: simplify regex validation, drop bootstrap/fallback scaffolding
rmobmina
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b31f367

Commits on Aug 7, 2026

Replace per-species is_XXX_gene_valid() wrappers with direct is_efp_gene_valid() calls
rmobmina
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6047eef

Commits on Aug 10, 2026

Fix flake8 E302 in test_efp_data.py
rmobmina
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3050b4c
Fix cacao gene ID validation bypass and simplify eFP query service
rmobmina
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7f420a0

Commits on Aug 13, 2026

Commits on Aug 18, 2026

cleaning up
rmobmina
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f34219e
fix test assertion for updated invalid-gene error message
rmobmina
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e824146

Commits on Aug 20, 2026

additional cleaning up
rmobmina
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4ae2bfd

Commits on Aug 24, 2026

Simplify eFP gene expression querying with dynamic per-database models
rmobmina
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3dc939b

Commits on Aug 25, 2026

Commits on Aug 28, 2026

revert efp_utils
rmobmina
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38dcb4e
Remove EFP_PROJECT_REGEXES and is_efp_gene_valid, use 1:1 gene_id_patterns lookups
rmobmina
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374d01e

Commits on Aug 30, 2026

DRY gene ID validation into BARUtils.is_valid_gene_id
rmobmina
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d50f959