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KDA Examples v0.3.0

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@nawtrey nawtrey released this 02 Aug 00:02
· 1 commit to master since this release
v0.3.0
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Learn about vigilant mode.

What's Changed

  • Updated both EmrE notebooks to store the net cycle fluxes for all cycles for the specific cases we look at in the kda paper. Notebooks now use EmrE cycles dictionary from other EmrE analysis code (transition flux analysis) for reproducibility (see #20)

  • Fixed the table generated by the EmrE net cycle flux notebook for RAA biasing. Newly generated table has the flux values
    in the correct locations (see #21)

  • Added KAPattern vs KDA comparison script along with the raw terminal output from the comparison (see #22)

  • Added KDA runtime to KAPattern comparison as well as a script to measure KDA expression evaluation times (see #23)

Full Comparison: v0.2.0...v0.3.0

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