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Set output BAM glob to *.bam to capture both BAM names from pipeline
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Set output BAM glob to *.bam to capture both BAM names from pipeline
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Walt Shands committed Jan 12, 2017
1 parent 1839ee6 commit 91a7f22
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docker/rnaseq-cgl-pipeline.cwl
Original file line number Diff line number Diff line change
Expand Up @@ -174,7 +174,7 @@ outputs:
# items: ["null", File]
items: File
outputBinding:
glob: '*.sortedByCoord.md.bam'
glob: '*.bam'
doc: "BAM result files RNA-seq CGL pipeline"
baseCommand: ["--logDebug"]
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