Add disk to bamqc (resolves #38) (#40)

BD2KGenomics · Jan 11, 2017 · 8fa52c3 · 8fa52c3
1 parent 88b3774
commit 8fa52c3
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/toil_rnaseq/rnaseq_cgl_pipeline.py b/src/toil_rnaseq/rnaseq_cgl_pipeline.py
@@ -159,7 +159,8 @@ def bam_qc(job, config, star_output):
         transcriptome_id, sorted_id, wiggle_id, log_id = star_output
     else:
         transcriptome_id, sorted_id, log_id = star_output
-    return job.addChildJobFn(run_bam_qc, sorted_id, config, cores=cores).rv()
+    disk = 5 * sorted_id.size
+    return job.addChildJobFn(run_bam_qc, sorted_id, config, cores=cores, disk=disk).rv()
 
 
 def rsem_quantification(job, config, star_output):