ibl-ephys-alignment-gui/pyproject.toml at main · AllenNeuralDynamics/ibl-ephys-alignment-gui · GitHub

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[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "ibl-ephys-alignment-gui"
description = "Tool for aligning electrophysiological features to anatomical landmarks."
license = { text = "MIT" }
requires-python = ">=3.9"
authors = [{ name = "International Brain Laboratory" }]
classifiers = ["Programming Language :: Python :: 3"]
readme = "README.md"

dependencies = [
  "aind-data-schema<2.0",
  "aind-data-access-api",
  "aind-qcportal-schema",
  "aind-registration-utils",
  "antspyx",
  "aws-requests-auth",
  "iblatlas",
  "iblutil",
  "nibabel",
  "PyQt5",
  "pyqtgraph",
  "SimpleITK",
]

dynamic = ["version"]

[project.optional-dependencies]
dev = ['black', 'coverage', 'flake8', 'interrogate', 'isort']

[project.scripts]
launch = 'ephys_alignment_gui.launch_gui:main'

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.dynamic]
version = { attr = "ephys_alignment_gui.__version__" }

[tool.black]
line-length = 88
target_version = ['py39']
exclude = '''

(
  /(
      \.eggs         # exclude a few common directories in the
    | \.git          # root of the project
    | \.hg
    | \.mypy_cache
    | \.tox
    | \.venv
    | _build
    | build
    | dist
  )/
  | .gitignore
)
'''

[tool.ruff]
line-length = 88
target-version = "py311"

[tool.ruff.lint]
extend-select = ["Q", "RUF100", "C90", "I", "F", "E", "W", "UP", "ANN", "PYI"]
extend-ignore = ["ANN401"]
per-file-ignores = { "tests/*.py" = [
  "ANN",
], "docs/**/*.py" = [
  "ANN",
], "notebooks/*.py" = [
  "ANN",
] }
mccabe = { max-complexity = 14 }
pydocstyle = { convention = "numpy" }

[tool.codespell]
skip = '.git,*.pdf,*.svg,./bonsai,*.bonsai,./docs/_build,uv.lock,./doc_template,./docs/build'
ignore-words-list = "nd"

[tool.coverage.run]
omit = ["*__init__*"]
source = ["ephys_alignment_gui", "tests"]

[tool.coverage.report]
exclude_lines = [
  "if __name__ == .__main__.:",
  "from",
  "import",
  "pragma: no cover",
]
fail_under = 100

[tool.isort]
line_length = 88
profile = "black"


[tool.interrogate]
ignore-init-method = true
ignore-magic = true
ignore_module = true
fail-under = 30
exclude = [
  "__init__.py",
  "tests",
  "docs",
  "build",
  "setup.py",
  "examples",
  "site",
]

[tool.mypy]
files = ["src/ibl_ephys_alignment_gui"]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_unreachable = true
strict_equality = true
show_error_codes = true

[[tool.mypy.overrides]]
module = "tests.*"
disallow_untyped_defs = false
disallow_incomplete_defs = false