Update LIMS2 modules to use Py3

[wbwakeman]

breaking:
"MORPHOLOGY_UPRIGHT_TRANSFORM_QUEUE"
"TISSUECYTE_PROJECTION_THUMBNAIL_QUEUE"
"NEURON_GLOBAL_FEATURES_QUEUE"
"TISSUECYTE_UNIONIZE_CAV_QUEUE"
"TISSUECYTE_UNIONIZE_CLASSIC_QUEUE"
"EPHYS_NWB_CONVERTER_QUEUE"
"CONNECTIVITY_CORTICAL_PROJECTION_QUEUE"

not breaking:
"OPHYS_MOTION_CORRECTION_QUEUE"
"ISI_NWB_QUEUE"
"NIKON_ND2_DECONVOLUTION_QUEUE"
"DEWARPING_QUEUE"

Fixed:
"NEUROPIL_CORRECTION_QUEUE"
"ANNOTATED_REGION_METRICS_QUEUE"

[wbwakeman]

For Morphology Upright Transform, it is missing a package that is added to the PYTHONPATH by that run_python.sh script

import neuron_morphology.swc as swc

ModuleNotFoundError: No module named 'neuron_morphology'

/shared/bioapps/infoapps/lims2_modules/lib/python/run_python.sh
export PYTHONPATH=/shared/bioapps/infoapps/lims2_modules/lib/neuron_morphology:${PYTHONPATH}