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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 399 162

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 521 repositories
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 8 Updated Oct 9, 2026
  • npc_io Public

    File IO tools for MindScope Neuropixels projects in the cloud.

    AllenInstitute/npc_io's past year of commit activity
    Python 0 MIT 1 0 1 Updated Oct 9, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Oct 9, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 1 MIT 0 0 3 Updated Oct 9, 2026
  • arborist-experiments Public

    Trees are the most inspiring structures

    AllenInstitute/arborist-experiments's past year of commit activity
    Python 0 MIT 0 0 3 Updated Oct 9, 2026
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 336 BSD-3-Clause 103 68 9 Updated Oct 8, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 8, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 55 13 Updated Oct 8, 2026
  • Allen_Brain_Map_Resource_Finder Public
    AllenInstitute/Allen_Brain_Map_Resource_Finder's past year of commit activity
    HTML 0 0 3 0 Updated Oct 8, 2026
  • openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    AllenInstitute/openscope_databook's past year of commit activity
    Python 76 33 7 2 Updated Oct 8, 2026
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