test: [Automatic] Constraints upgrades: numpy, partsegcore-compiled-backend, tifffile
#1253
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Reviewer's Guide by SourceryThis pull request updates the constraint files for various Python versions and configurations, upgrading packages such as No diagrams generated as the changes look simple and do not need a visual representation. File-Level Changes
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WalkthroughThis pull request updates dependency versions across multiple requirements files for Python 3.9, 3.10, 3.11, and 3.12 environments. Each file now references newer versions for packages such as Changes
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Hey @Czaki - I've reviewed your changes - here's some feedback:
Overall Comments:
- Consider grouping the constraint changes by python version to improve readability.
Here's what I looked at during the review
- 🟢 General issues: all looks good
- 🟢 Security: all looks good
- 🟢 Testing: all looks good
- 🟢 Complexity: all looks good
- 🟢 Documentation: all looks good
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Actionable comments posted: 0
🧹 Nitpick comments (1)
requirements/constraints_py3.10_pydantic_1.txt (1)
182-182: Ensurenumpyis updated to 2.2.4
Please double-check that the numpy version in this constraints file is indeed 2.2.4 (as stated by the PR objectives) to maintain consistency with non‑pydantic constraints.
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📒 Files selected for processing (9)
requirements/constraints_py3.10.txt(6 hunks)requirements/constraints_py3.10_pydantic_1.txt(6 hunks)requirements/constraints_py3.11.txt(6 hunks)requirements/constraints_py3.11_pydantic_1.txt(6 hunks)requirements/constraints_py3.12.txt(6 hunks)requirements/constraints_py3.12_docs.txt(5 hunks)requirements/constraints_py3.12_pydantic_1.txt(6 hunks)requirements/constraints_py3.9.txt(4 hunks)requirements/constraints_py3.9_pydantic_1.txt(4 hunks)
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- GitHub Check: Base py3.12 / ubuntu-22.04 py 3.12 latest PyQt6
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- GitHub Check: Base py3.10 / ubuntu-22.04 py 3.10 latest PyQt5 _pydantic_1
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🔇 Additional comments (41)
requirements/constraints_py3.9.txt (4)
18-18: Dependency Update: attrs version bump
The version for the attrs package has been updated to 25.3.0. This change is consistent with similar updates in other constraints files. Please verify that all dependent modules continue to function as expected.
43-43: Dependency Update: coverage version bump
The coverage package is now set to version 7.7.0. Ensure that the test suites and CI pipelines are compatible with this update.
238-238: Dependency Update: partsegcore-compiled-backend upgrade
The upgrade to version 0.15.12 should be reviewed with particular attention to any compiled module integrations. A quick regression test is recommended.
353-353: Dependency Update: pyzmq version bump
Updating pyzmq to 26.3.0 appears consistent with the overall dependency bump. Please confirm that no runtime messaging/API changes lead to issues.requirements/constraints_py3.9_pydantic_1.txt (4)
16-16: Dependency Update: attrs version bump
The attrs version has been bumped to 25.3.0. This maintains consistency with the primary constraints file.
41-41: Dependency Update: coverage version bump
Coverage is now at 7.7.0. Please ensure that the testing infrastructure remains fully compatible with this version.
236-236: Dependency Update: partsegcore-compiled-backend upgrade
The update to 0.15.12 should be checked against features relying on compiled components. A brief smoke test is advised.
350-350: Dependency Update: pyzmq version bump
The pyzmq package is updated to 26.3.0. Verify that no breaking API changes affect its usage in the project.requirements/constraints_py3.12_docs.txt (3)
16-16: Dependency Update: attrs version bump
The attrs package has been updated to 25.3.0, aligning this docs constraint file with others.
168-168: Dependency Update: numpy version bump
The numpy version is now 2.2.4. Although this is a minor version bump, please check that the documentation builds (and any image-related examples) are still functioning correctly.
395-395: Dependency Update: tifffile version bump
Tifffile has been upgraded to 2025.3.13. Ensure that any image processing examples in the docs are validated against this release.requirements/constraints_py3.12.txt (6)
18-18: Dependency Update: attrs version bump
Upgrading attrs to 25.3.0 helps maintain uniformity across Python version constraints. No issues are anticipated.
43-43: Dependency Update: coverage version bump
Coverage has been updated to 7.7.0. Please run the test suites to confirm that there are no new incompatibilities.
179-179: Dependency Update: numpy version bump
The numpy package is now 2.2.4—a minor update that should be backward compatible. Still, it is worth a quick check in numerical calculations.
228-228: Dependency Update: partsegcore-compiled-backend upgrade
The upgrade to 0.15.12 should be validated especially for any functions that rely on compiled backend optimizations.
342-342: Dependency Update: pyzmq version bump
With pyzmq now at 26.3.0, please ensure that existing message passing and related functionalities remain stable.
440-440: Dependency Update: tifffile version bump
Tifffile has been updated to 2025.3.13. Confirm that image file operations and processing libraries work seamlessly with this version.requirements/constraints_py3.12_pydantic_1.txt (5)
16-16: Dependency Update: attrs version bump
Aligning attrs to version 25.3.0 here ensures consistency with other pydantic constraints. No issues are expected.
41-41: Dependency Update: coverage version bump
Coverage is now bumped to 7.7.0. Please run a quick verification with your test configuration to ensure no regressions.
226-226: Dependency Update: partsegcore-compiled-backend upgrade
The backend compiled component has been updated to 0.15.12. Validate that this upgrade does not break any interactions with pydantic models relying on it.
339-339: Dependency Update: pyzmq version bump
The upgrade to pyzmq 26.3.0 is noticed here as well. Testing for any API changes or deprecations is suggested.
437-437: Dependency Update: tifffile version bump
Tifffile has been set to 2025.3.13 in this constraints file, aligning with other environments. Ensure that pydantic-integrated image processing remains unaffected.requirements/constraints_py3.11_pydantic_1.txt (2)
16-16: Updatedattrsto 25.3.0
The version bump from 25.1.0 to 25.3.0 is correctly applied. This change is in line with the coordinated update across environments.
41-41: Updatedcoverageto 7.7.0
The new version of coverage is applied consistently here.requirements/constraints_py3.10.txt (6)
18-18: Updatedattrsto 25.3.0
The new version is applied on line 18.
43-43: Updatedcoverageto 7.7.0
This update is present on line 43 and matches the coordinated update.
185-185: Updatednumpyto 2.2.4
Ensure that the Python 3.10 environment accepts the new numpy version without incompatibilities.
232-232: Updatedpartsegcore-compiled-backendto 0.15.12
This update is applied correctly.
349-349: Updatedpyzmqto 26.3.0
The version bump is correct.
445-445: Updatedtifffileto 2025.3.13
Review the release notes to ensure no breaking changes affect image processing integrations in PartSeg.requirements/constraints_py3.10_pydantic_1.txt (5)
16-16: Updatedattrsto 25.3.0
This change aligns with the other constraints files.
41-41: Updatedcoverageto 7.7.0
The updated version is applied as required.
232-232: Updatedpartsegcore-compiled-backendto 0.15.12
The dependency update is in line with the coordinated bump.
346-346: Updatedpyzmqto 26.3.0
The new version is applied correctly.
442-442: Updatedtifffileto 2025.3.13
Make sure to verify that the new tifffile version is compatible with any tools that depend on it.requirements/constraints_py3.11.txt (6)
18-18: Updatedattrsto 25.3.0
This change is applied correctly and is consistent with other files.
43-43: Updatedcoverageto 7.7.0
The new value is in place on line 43.
181-181: Updatednumpyto 2.2.4
Please verify that this version is fully compatible with the PartSeg modules under Python 3.11.
230-230: Updatedpartsegcore-compiled-backendto 0.15.12
The value is updated as expected.
347-347: Updatedpyzmqto 26.3.0
The change is applied correctly.
443-443: Updatedtifffileto 2025.3.13
Verify that any downstream image processing components are tested against this update.
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #1253 +/- ##
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+ Coverage 93.15% 93.16% +0.01%
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Files 210 210
Lines 33288 33288
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+ Hits 31009 31014 +5
+ Misses 2279 2274 -5 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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This PR is automatically created and updated by PartSeg GitHub
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