test: [Automatic] Constraints upgrades: imageio, napari, numpy
#1180
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WalkthroughThe recent changes involve updating the version specifications of several Python packages across various requirements files. Notable updates include the upgrade of Changes
Sequence Diagram(s)sequenceDiagram
participant A as User
participant B as Application
participant C as Package Manager
A->>B: Request functionality
B->>C: Check package versions
C->>C: Update imageio, napari
C->>C: Downgrade numpy
C->>B: Confirm updates
B->>A: Provide updated functionality
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Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (11)
- requirements/constraints_py3.10.txt (3 hunks)
- requirements/constraints_py3.10_pydantic_1.txt (3 hunks)
- requirements/constraints_py3.11.txt (3 hunks)
- requirements/constraints_py3.11_docs.txt (3 hunks)
- requirements/constraints_py3.11_pydantic_1.txt (3 hunks)
- requirements/constraints_py3.12.txt (3 hunks)
- requirements/constraints_py3.12_pydantic_1.txt (3 hunks)
- requirements/constraints_py3.8.txt (1 hunks)
- requirements/constraints_py3.8_pydantic_1.txt (1 hunks)
- requirements/constraints_py3.9.txt (2 hunks)
- requirements/constraints_py3.9_pydantic_1.txt (2 hunks)
Files skipped from review due to trivial changes (3)
- requirements/constraints_py3.10_pydantic_1.txt
- requirements/constraints_py3.8_pydantic_1.txt
- requirements/constraints_py3.9_pydantic_1.txt
Additional comments not posted (21)
requirements/constraints_py3.11_docs.txt (3)
84-84: Upgradeimageioto version 2.35.0.The upgrade from
2.34.2to2.35.0may include bug fixes or new features. Ensure compatibility with other dependencies that rely onimageio.Verification successful
No explicit compatibility issues found with
imageio2.35.0.The
imageiolibrary is used inpackage/PartSegCore/io_utils.py, but no specific version constraints or compatibility issues were found in the code. Ensure to run tests to confirm full compatibility.
package/PartSegCore/io_utils.py:imageio.imsaveis used.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify compatibility of `imageio` 2.35.0 with other dependencies. # Test: Check for any specific version constraints or issues in dependent packages. rg --type python 'imageio' -A 5Length of output: 62
Script:
#!/bin/bash # Description: Verify compatibility of `imageio` 2.35.0 with other dependencies. # Test: Check for any specific version constraints or issues in dependent packages. rg --type py 'imageio' -A 5Length of output: 670
172-172: Downgradenumpyto version 1.26.4.The downgrade from
2.0.1to1.26.4could be due to compatibility issues. Ensure that this change does not break functionality in the codebase that relies on features fromnumpy2.0.1.
154-154: Upgradenaparito version 0.5.2.The update from
0.5.1to0.5.2may introduce improvements or bug fixes. Verify that this upgrade does not introduce breaking changes.requirements/constraints_py3.12_pydantic_1.txt (3)
82-82: Upgradeimageioto version 2.35.0.The upgrade from
2.34.2to2.35.0may include bug fixes or new features. Ensure compatibility with other dependencies that rely onimageio.
158-158: Upgradenaparito version 0.5.2.The update from
0.5.1to0.5.2may introduce improvements or bug fixes. Verify that this upgrade does not introduce breaking changes.
176-176: Downgradenumpyto version 1.26.4.The downgrade from
2.0.1to1.26.4could be due to compatibility issues. Ensure that this change does not break functionality in the codebase that relies on features fromnumpy2.0.1.requirements/constraints_py3.12.txt (3)
84-84: Upgradeimageioto version 2.35.0.The upgrade from
2.34.2to2.35.0may include bug fixes or new features. Ensure compatibility with other dependencies that rely onimageio.
160-160: Upgradenaparito version 0.5.2.The update from
0.5.1to0.5.2may introduce improvements or bug fixes. Verify that this upgrade does not introduce breaking changes.
178-178: Downgradenumpyto version 1.26.4.The downgrade from
2.0.1to1.26.4could be due to compatibility issues. Ensure that this change does not break functionality in the codebase that relies on features fromnumpy2.0.1.requirements/constraints_py3.11_pydantic_1.txt (3)
160-160: Update:napariversion incremented.The
naparipackage has been updated to version0.5.2. Verify that this version does not introduce breaking changes.
178-178: Downgrade:numpyversion decreased.The
numpypackage has been downgraded to version1.26.4. Ensure that this downgrade does not break any functionality.
82-82: Update:imageioversion incremented.The
imageiopackage has been updated to version2.35.0. Ensure compatibility with other dependencies that rely on this package.Verification successful
Compatibility of
imageio==2.35.0with existing codeThe
imageiopackage is used inpackage/PartSegCore/io_utils.pyfor saving images withimageio.imsave. This usage is generally stable across versions. However, ensure thatimageioversion2.35.0still supports theimsavefunction to avoid potential issues.
- File:
package/PartSegCore/io_utils.py- Function:
imageio.imsaveConsider verifying the compatibility manually if there are concerns about specific image formats or additional functionality.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify compatibility of `imageio==2.35.0` with other dependencies. # Test: Check if `imageio` is compatible with the current environment. pip checkLength of output: 82
Script:
#!/bin/bash # Search for any usage of the `imageio` package in the codebase to identify potential compatibility issues. ast-grep --lang python --pattern 'import imageio' ast-grep --lang python --pattern 'from imageio import $_'Length of output: 161
Script:
#!/bin/bash # Search for functions in `package/PartSegCore/io_utils.py` that use `imageio`. ast-grep --lang python --pattern 'def $_($$$_):' package/PartSegCore/io_utils.pyLength of output: 82
Script:
#!/bin/bash # Search for `imageio` usage in `package/PartSegCore/io_utils.py` to determine how it is being utilized. rg 'imageio' package/PartSegCore/io_utils.py -A 5Length of output: 308
requirements/constraints_py3.11.txt (3)
84-84: Update:imageioversion incremented.The
imageiopackage has been updated to version2.35.0. Ensure compatibility with other dependencies that rely on this package.
162-162: Update:napariversion incremented.The
naparipackage has been updated to version0.5.2. Verify that this version does not introduce breaking changes.
180-180: Downgrade:numpyversion decreased.The
numpypackage has been downgraded to version1.26.4. Ensure that this downgrade does not break any functionality.requirements/constraints_py3.10.txt (3)
88-88: Update:imageioversion incremented.The
imageiopackage has been updated to version2.35.0. Ensure compatibility with other dependencies that rely on this package.
168-168: Update:napariversion incremented.The
naparipackage has been updated to version0.5.2. Verify that this version does not introduce breaking changes.
186-186: Downgrade:numpyversion decreased.The
numpypackage has been downgraded to version1.26.4. Ensure that this downgrade does not break any functionality.requirements/constraints_py3.9.txt (2)
172-172: Update tonapariversion.The
naparipackage has been updated from0.5.1to0.5.2. Ensure that this version is compatible with other dependencies and does not introduce any breaking changes.
88-88: Update toimageioversion.The
imageiopackage has been updated from2.34.2to2.35.0. Ensure that this version is compatible with other dependencies and does not introduce any breaking changes.requirements/constraints_py3.8.txt (1)
83-83: Update toimageioversion.The
imageiopackage has been updated from2.34.2to2.35.0. Ensure that this version is compatible with other dependencies and does not introduce any breaking changes.
This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.
The updated packages are:
Summary by CodeRabbit
New Features
imageioandnapari, which may enhance functionality.Bug Fixes
numpy, potentially resolving compatibility issues with other libraries.Chores