ci: [pre-commit.ci] pre-commit autoupdate (#1237)

<!--pre-commit.ci start-->
updates:
- [github.com/psf/black-pre-commit-mirror: 24.10.0 →
25.1.0](psf/black-pre-commit-mirror@24.10.0...25.1.0)
- [github.com/astral-sh/ruff-pre-commit: v0.8.6 →
v0.9.4](astral-sh/ruff-pre-commit@v0.8.6...v0.9.4)
- [github.com/executablebooks/mdformat: 0.7.21 →
0.7.22](hukkin/mdformat@0.7.21...0.7.22)
- [github.com/codespell-project/codespell: v2.3.0 →
v2.4.1](codespell-project/codespell@v2.3.0...v2.4.1)
<!--pre-commit.ci end-->

## Summary by Sourcery

Update ruff-pre-commit to v0.9.1.

Enhancements:
- Upgrade ruff from v0.8.6 to v0.9.1.

CI:
- Update pre-commit hooks to the latest version.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Grzegorz Bokota <[email protected]>

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 24.10.0
+    rev: 25.1.0
     hooks:
     - id: black
       pass_filenames: true
@@ -17,15 +17,15 @@ repos:
     - id: debug-statements
     - id: mixed-line-ending
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.6
+    rev: v0.9.4
     hooks:
       - id: ruff
 -   repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
     hooks:
     -   id: rst-backticks
 -   repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.21  # Use the ref you want to point at
+    rev: 0.7.22  # Use the ref you want to point at
     hooks:
     - id: mdformat
       exclude: TEST_FAIL_TEMPLATE.md|bug_report.md|feature_request.md
@@ -45,7 +45,7 @@ repos:
         files: ^package/PartSegImage/.+\.py
 
 -   repo: https://github.com/codespell-project/codespell
-    rev: v2.3.0
+    rev: v2.4.1
     hooks:
     - id: codespell
       additional_dependencies:

package/PartSeg/common_gui/colormap_creator.py

@@ -377,7 +377,7 @@ class for preview single colormap. Witch checkbox for change selection.
 
     :param colormap: colormap to show
     :param accepted: if checkbox should be checked
-    :param name: name which will be emitted in all signals as firs argument
+    :param name: name which will be emitted in all signals as first argument
     """
 
     selection_changed = Signal(str, bool)

package/PartSeg/common_gui/qt_modal.py

@@ -1,4 +1,4 @@
-"""from napari._qt.dialog.modal """
+"""from napari._qt.dialog.modal"""
 
 from qtpy.QtCore import QPoint, QRect, Qt
 from qtpy.QtGui import QCursor, QGuiApplication, QKeyEvent

package/PartSegCore/analysis/load_functions.py

@@ -142,7 +142,7 @@ def load_project_from_tar(tar_file, file_path):
 
 
 def load_project(
-    file: typing.Union[str, Path, tarfile.TarFile, TextIOBase, BufferedIOBase, RawIOBase, IOBase]
+    file: typing.Union[str, Path, tarfile.TarFile, TextIOBase, BufferedIOBase, RawIOBase, IOBase],
 ) -> ProjectTuple:
     """Load project from archive"""
     tar_file, file_path = open_tar_file(file)

package/PartSegImage/image_writer.py

@@ -31,7 +31,7 @@ def prepare_metadata(cls, image: Image, channels: int):
         shift = image.get_um_shift()
         plane_li = [
             {
-                "TheT": t,
+                "TheT": t,  # codespell:ignore thet
                 "TheZ": z,
                 "TheC": c,
                 "PositionZ": shift[0] if len(shift) == 3 else 0,