.gitignore

# Ignore notebook checkpoints
.ipynb_checkpoints/
example/.ipynb_checkpoints/
expressyeaself/.ipynb_checkpoints/
expressyeaself/tests/.ipynb_checkpoints/
expressyeaself/models/.ipynb_checkpoints/
example/processed_data/.ipynb_checkpoints/

# Ignore pycaches
expressyeaself/__pycache__/*
expressyeaself/tests/__pycache__/*
example/__pycache__/*
expressyeaself/models/*/__pycache__/

# Ignore development notebooks
copy_ExampleNetworks.ipynb
process_data.ipynb

# Ignore large data files
example/average*
example/Abf1TATA_data/2019*
example/Abf1TATA_data/average*
example/other_scaffolds/*
example/pTpA_data/2019*
example/pTpA_data/average*
example/processed_data/*

# Ignore files created by unit tests
expressyeaself/tests/trial*
expressyeaself/tests/test_files/*

# Ignore notebooks created for unit test development
expressyeaself/tests/*.ipynb

# Ignore .coverage
.coverage