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Warn about MHC region #2

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xiangzhu opened this issue Apr 25, 2018 · 0 comments
Open

Warn about MHC region #2

xiangzhu opened this issue Apr 25, 2018 · 0 comments

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@xiangzhu
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I wonder if we could use a warnings() (or even a stop()) when people try to feed summary data from MHC region to the program.

The main reason is that LD pattern of MHC is complicated, and may be hard to estimated reliably from 1000 Genomes data.

Related notes: https://crerecombinase.github.io/PolygenicRSS/New_WholeGenome.html#mhc
@xiangzhu xiangzhu changed the title Warning about MHC region Warn about MHC region Apr 25, 2018
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