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.gitignore
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fasta.h
fast.c
fast.h
makefile
scaff_barcode-length.c
scaff_barcode-screen.c
scaff_barcode-sort.c
scaff_BC-reads-2.c
scaff_break-clean.c
scaff_break-names.c
scaff_bwa.c
scaff_contigs-sort.c
scaff_fastq.c
scaff_length.c
scaff_mapping-clean.c
scaff_mapping-sort.c
scaff_matrix.c
scaff_outbreak.c
scaff_outbreak-seq.c
scaff_output.c
scaff_PCRdup.c
scaff_reads.c
scaff_rename.c
scaff_samout.c
scaff_samprocess.c
scaff_superAGP.c
super2agp.c
log:
bwa_cloning.log
bwa_installation.log
smalt_untar.log
smalt_wget.log
sources_compilation.log
log/bwa_cloning.log
log/bwa_installation.log
log/smalt_untar.log
log/smalt_wget.log
log/sources_compilation.log
scaff-bin/break10x
scaff-bin/bwa
scaff-bin/scaff10x
scaff-bin/scaff_barcode-screen
scaff-bin/scaff_barcode-sort
scaff-bin/scaff_BC-reads-2
scaff-bin/scaff_break-clean
scaff-bin/scaff_break-names
scaff-bin/scaff_bwa
scaff-bin/scaff_contigs-sort
scaff-bin/scaff_fastq
scaff-bin/scaff_length
scaff-bin/scaff_mapping-clean
scaff-bin/scaff_mapping-sort
scaff-bin/scaff_matrix
scaff-bin/scaff_outbreak
scaff-bin/scaff_outbreak-seq
scaff-bin/scaff_output
scaff-bin/scaff_PCRdup
scaff-bin/scaff_reads
scaff-bin/scaff_rename
scaff-bin/scaff_samout
scaff-bin/scaff_samprocess
scaff-bin/scaff_superAGP
scaff-bin/smalt