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global.R
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#shiny::runApp(display.mode="showcase")
options(shiny.reactlog=TRUE) #press Ctrl+F3 to launch the reactive log visualization
options(shiny.autoload.r = FALSE)
options(stringsAsFactors = FALSE)
options(scipen=999)
options(warning.length=8170)
#options(shiny.maxRequestSize=30*1024^2)
options(shiny.maxRequestSize=500*1024^2) #500MB
#options(warn=2, error=recover)
options(warn=0, error=NULL)
#Sys.setlocale("LC_ALL",c("English"))
RSF_MANAGEMENT_APPLICATION_ID <- "4608A309E2E38860DC98FAC53F967CF2"
LOCATIONS <- list(ARL="/credentials/credentials-remote-ARL.yaml",
#SSA_DEV="/credentials/credentials-remote-dev.yaml",
#SSA_PROD="/credentials/credentials-remote-RSF.yaml",
Jason_DEV_Shafique="/credentials/credentials-rsfjson-rsfshafique.yaml",
Jason_DEV="/credentials/credentials-rsfjson-rsfdev.yaml",
Jason_PROD="/credentials/credentials-rsfjson-rsfprod.yaml")
#LOCATION <- "Jason_DEV_Shafique"
LOCATION <- "Jason_DEV"
#LOCATION <- "Jason_PROD"
if (grepl("DEV",LOCATION)==TRUE) {
#options(shiny.erctror = browser)
options(shiny.error = NULL)
}
library(pdftools)
library(lubridate)
library(stringr)
library(data.table)
library(shiny)
library(shinydashboard)
library(shinybusy)
library(shinyWidgets)
library(shinycssloaders)
library(shinyjs)
#library(shinyglide)
library(DT)
library(jsonlite)
library(tools)
library(plyr)
#library(tidyr)
library(glue)
library(R.utils)
library(digest)
#https://appsilon.com/forget-about-excel-use-r-shiny-packages-instead/?nabe=4634331497365504:1
library(openxlsx)
#library(reshape2)
library(rlang)
library(RPostgres)
library(pool)
library(yaml)
library(sendmailR)
source("./R/openxlsx_get_formulas.R")
source('./accounts/module_accounts_server.R')
source('./accounts/ui_objects.R')
source('./accounts/db_user_login_change_password.R')
source('./accounts/db_user_login_reset_check.R')
source('./accounts/db_user_check_email_exists.R')
source('./accounts/db_user_reset_password.R')
source('./accounts/db_user_check_permission.R')
source('./accounts/db_user_login.R')
source('./accounts/db_user_logout.R')
source("./R/reports/export_reporting_cohort_to_excel.R")
source("./R/db_create_new_rsf_ids.R")
source("./R/db_create_entity_indicator_requirements.R")
source("./R/db_data_get_info.R")
source("./R/db_data_get_flags.R")
source("./R/db_data_update_flags.R")
source("./R/db_data_get_fx_ratio.R")
source("./R/db_data_get_current.R")
source("./R/db_data_pivot_family.R")
source("./R/db_cohort_get_data.R")
source("./R/db_cohort_create.R")
source("./R/db_cohort_upload_file.R")
source("./R/db_cohort_download_file.R")
source("./R/db_export_template_download_file.R")
source("./R/db_rsf_reports_list.R")
source("./R/db_export_create.R")
source("./R/db_export_get_template.R")
source("./R/db_export_load_report.R")
source("./R/db_add_update_data_user.R")
source("./R/db_add_update_data_system.R")
source("./R/db_rsf_checks_add_update.R")
source("./R/db_rsf_checks_validate.R")
source("./R/db_program_get_data.R")
source("./R/db_program_create.R")
source("./R/db_program_download.R")
source("./R/db_program_revalidate_calculations.R")
source("./R/db_program_toggle_indicator_subscription.R")
source("./R/db_program_toggle_check_subscription.R")
source("./R/rsf_computation_fx_conversion.R")
source("./R/rsf_program_calculate.R")
source("./R/rsf_program_check.R")
source("./R/rsf_program_perform_calculations.R")
source("./R/rsf_program_perform_checks.R")
source("./R/db_program_get_stale_calculations.R")
source("./R/db_program_get_stale_checks.R")
source("./R/db_program_facility_checks_add_update_guidance.R")
source("./R/db_indicators_get_labels.R")
source("./R/db_indicators_get_header_actions.R")
source("./R/db_indicator_update.R")
source("./R/db_indicator_create.R")
source("./R/db_indicator_delete.R")
source("./R/db_indicators_get_formulas.R")
source("./R/db_indicators_get_calculation_parameter_rsf_pfcbl_ids.R")
source("./R/db_checks_get_calculation_parameter_rsf_pfcbl_ids.R")
source("./R/rsf_indicators_calculate_do_test.R")
source("./R/rsf_calculations_recalculate.R")
source("./R/db_check_create.R")
source("./R/db_check_update.R")
source("./R/db_checks_get_formulas.R")
source("./R/db_rsf_options_create.R")
source("./R/db_rsf_options_update.R")
source("./R/db_rsf_options_delete.R")
source("./R/db_rsf_get_options_groups.R")
source("./R/rsf_checks_calculate.R")
source("./R/rsf_checks_do_test.R")
source("./R/rsf_indicators_calculate.R")
source("./R/reports/export_rsf_setup_files_to_excel.R")
source("./R/rsf_reports_data_integrity_key.R")
source("./R/rsf_reports_create_excel_sheet.R")
source("./R/rsf_reports_excel_read_rsf_data.R")
source("./R/db_rsf_get_pfcbl_from_sys_ids.R")
source("./R/db_get_rsf_pfcbl_id_by_sys_name.R")
source("./R/slgp_helpers_trim.R")
source("./R/rsf_database.R")
source("./R/rsf_calculations_environment.R")
source("./R/rsf_calculations_resolve_parameters.R")
source("./R/rsf_checks_resolve_parameters.R")
source('./R/templates/template_excel_read_sheet.R')
source('./R/templates/template_set_data_match_rsf_ids.R')
source('./R/templates/template_set_data_match_pfcbl_ids.R')
source("./R/templates/template_set_redundancy_reporting.R")
source("./R/templates/template_remove_data_category_misalignments.R")
source('./R/templates/template_upload.R')
source('./R/templates/template_process.R')
source("./R/reports/export_dashboard_view_to_excel.R")
source("./R/reports/export_dashboard_edits_to_excel.R")
source("./R/reports/export_backup_data_to_csv.R")
source("./R/reports/export_create_entity_to_excel.R")
source('./R/templates/parse_data_formats.R')
source('./R/templates/parse_template_labels.R')
source('./R/templates/template_parse_file.R')
source('./R/templates/template_parse_process_and_upload.R')
source('./R/templates/parse_template_IFC_QR.R')
source('./R/templates/parse_template_csv.R')
source('./R/templates/parse_template_rsf_setup.R')
source('./R/templates/parse_template_csv_backup_data.R')
source('./R/templates/parse_template_pfcbl_editor_report.R')
source('./R/templates/parse_template_rsf_create_entities.R')
# ########################
# source("./R/app/server_dashboard.R",local=serverENV)
# source("./R/app/server_dashboard_options.R",local=serverENV)
# source("./R/app/server_dashboard_reports.R",local=serverENV)
# source("./R/app/server_dashboard_edit.R",local=serverENV)
# source("./R/app/server_dashboard_exports.R",local=serverENV)
# source("./R/app/server_dashboard_exports_reports.R",local=serverENV)
# source("./R/app/server_datasets.R",local=serverENV)
# source("./R/app/server_datasets_review_flags.R",local=serverENV)
#
# source("./R/app/server_datasets_upload.R",local=serverENV)
#
# #When permissions are implemented, only load administrateive modules if an admin
# source("./R/app/server_setup.R",local=serverENV)
# source("./R/app/server_setup_program.R",local=serverENV)
# source("./R/app/server_setup_indicators.R",local=serverENV)
# source("./R/app/server_setup_checks.R",local=serverENV)
# source("./R/app/server_setup_templates.R",local=serverENV)
# source("./R/app/server_setup_create.R",local=serverENV)
#
# source("./R/app/server_admin_options.R",local=serverENV)
# source("./R/app/server_admin_options_module.R",local=serverENV)
#
# source("./R/app/server_admin_indicators.R",local=serverENV)
# source("./R/app/server_admin_indicator_formulas.R",local=serverENV)
# source("./R/app/server_admin_indicators_review.R",local=serverENV)
#
# source("./R/app/server_admin_checks.R",local=serverENV)
# source("./R/app/server_admin_checks_formulas.R",local=serverENV)
# source("./R/app/server_admin_checks_review.R",local=serverENV)
#
# source("./R/app/server_admin_users.R",local=serverENV)
#
# source("./R/app/server_datasets_guidance_module.R",local=serverENV)
# #######################
DASH_DISPLAY_BLUE_C <- "35,150,240,0.2"
DASH_DISPLAY_BLUE_CH <- "35,150,240,0.4"
DASH_DISPLAY_BLUE_HH <- "35,150,240,0.05"
DASH_DISPLAY_YELLOW_C <- "255,235,200,0.05"
DASH_DISPLAY_YELLOW_CH <- "255,235,200,0.35"
DASH_DISPLAY_YELLOW_HH <- "255,235,200,0.025"
SYS_PRINT_TIMING <- FALSE
if (grepl("DEV",LOCATION)==TRUE) SYS_PRINT_TIMING <- TRUE
status_message <- function(...) {
intercept <- dynGet("intercept_status_message",inherits=TRUE,ifnotfound = NULL)
if (!is.null(intercept)) exec(intercept,...)
cat(...)
#else cat("intercept_status_message not found\n",...)
}
debug_count <- 0
debug_time_running <- Sys.time()
debug_time_now <- Sys.time()
debug_msg <- c()
debugtime <- function(...,reset=FALSE) {
args <- unlist(list(...))
msg <- paste0(args,collapse=" ")
if (reset) {
ret <- debug_msg
debug_count <<- 0
debug_time_running <<- Sys.time()
debug_time_now <<- Sys.time()
debug_msg <<- c()
if (...length()==0) return (ret)
}
debug_count <<- debug_count+1
t1 <- format(Sys.time() - debug_time_now)
t2 <- format(Sys.time()-debug_time_running)
debug_time_now <<- Sys.time()
msg <- paste0(debug_count,": ",msg," @",t1," running total @",(t2))
debug_msg <<- c(debug_msg,msg)
#print(msg)
cat(msg,"\n")
#status_message(class="info",msg,"\n")
}
#SYS_PRINT_TIMING <- FALSE
SYS_PRINT_TIMING <- TRUE
if (grepl("DEV",LOCATION)==TRUE) devmode()
#devmode126(FALSE)
format_html_option <- function(options_group_name) {
html <- glue("<div class='indicator_bubble' style='vertical-align:middle;white-space:nowrap;padding-right:10px;display:inline-block;background-color:#3db83b'>
<div style='display:inline-block;vertical-align:middle;'><i class='fa fa-sitemap'></i></div>
<div style='display:inline-block;vertical-align:middle;'>{options_group_name}</div>
</div>")
return (html)
}
format_html_check_icon <- function(check_class,is_reporting_flag=FALSE,title=check_class,css_class="") {
icon_class <- switch(check_class,
critical='fas fa-fire',
error='fas fa-times-circle',
warning='fas fa-exclamation-triangle',
info='fas fa-info-circle',
"")
reporting_icon <- ""
if (is_reporting_flag==TRUE) reporting_icon <- "<i class='fas fa-file-upload icon-reporting' style='display:inline-block;'></i>"
html <- paste0(reporting_icon,"<i class='",icon_class," icon-",check_class," ",css_class,"' style='display:inline-block;' title=\"",title,"\"></i>")
return (html)
}
format_html_check <- function(check_name,
check_class,
check_type=NA,
is_subscribed=TRUE,
is_system=FALSE,
user_subscription=NULL,
id="") {
htmlid <- ifelse(nchar(id)>1,paste0("id='",id,"'"),"")
htmluserid <- ifelse(nchar(id)>1,paste0("id='",id,"subscription'"),"")
check_name <- gsub("[[:punct:]]"," ",check_name) #easier to read in html bubble
check_name <- sub("(loan|borrower|client|facility|program|global)","\\1:",check_name,ignore.case = T)
check_name <- tools::toTitleCase(check_name)
check_name <- gsub("^sys","SYS",check_name,ignore.case = T)
check_type_color <- fcase(check_type=="data_audit","violet",
check_type=="data_validity","violet",
check_type=="contract_breach","limegreen",
check_type=="contract_criteria","limegreen",
check_type=="business_integrity","skyblue",
check_type=="business_monitoring","skyblue",
check_type=="none","pink",
default="gray")
icon_class <- switch(check_class,
critical='fas fa-fire',
error='fas fa-times-circle',
warning='fas fa-exclamation-triangle',
info='fas fa-info-circle',
"")
unsubscribed <- ifelse(is_subscribed==FALSE," unsubscribed","")
user_subscribed <- fcase(is.null(user_subscription),"",
user_subscription==TRUE,
paste0("<i ",htmluserid," class='fa-regular fa-circle-check' style='color:white;font-size:12px;'></i>"),
user_subscription==FALSE,
paste0("<i ",htmluserid," class='fa-regular fa-circle-xmark' style='color:white;font-size:12px;'></i>"),
default=paste0("<i ",htmluserid," class='fa-regular fa-circle-question' style='color:white;font-size:12px;'></i>"))
#user_subscribed <- "<i name='userSubscription' class='fa-regular fa-circle-check' style='color:green'></i>"
html <- glue("<div class='check_mark' style='display:flex;flex-flow:row nowrap;white-space:nowrap;background:linear-gradient(to right,{check_type_color},white)'>
<div {htmlid} class='check_bubble {check_class}{unsubscribed}' style='display:flex;flex-flow:row nowrap;justify-content:flex-end;align-items: center;'>
<div style='color:rgba(250,250,250,.5);display:flex;flex-flow:row nowrap;margin-left:5px;'><i class='{icon_class}'></i></div>
<div style='margin-left:5px;margin-right:5px;display:flex;flex-flow:row nowrap;'>{check_name}</div>
{user_subscribed}
</div>
</div>")
return (html)
}
format_html_indicator <- function(indicator_name,
data_category,
data_type,
is_system,
is_calculated,
options_group_name=NA,
is_subscribed=TRUE,
user_subscription=NULL,
id="") {
data_category <- tolower(data_category)
data_type <- tolower(data_type)
is_calculated <- toupper(as.character(is_calculated))
is_system <- as.logical(is_system) #should only be passed-in by system
htmluserid <- ifelse(nchar(id)>1,paste0("id='",id,"subscription'"),"")
html_attributes <- "<div style='display:inline-block;white-space:nowrap;color:rgba(250,250,250,.5);vertical-align:middle;'>"
if (data_type=="number") html_attributes <- paste(html_attributes,"<i class='fa fa-hashtag' title='Data type: number' style='padding-left:5px;'></i>")
else if (data_type=="currency") html_attributes <- paste(html_attributes,"<i class='fa fa-coins' title='Data type: currency' style='padding-left:5px;'></i>")
else if (data_type=="currency_ratio") html_attributes <- paste(html_attributes,"<i class='fa fa-coins' title='Data type: currency' style='padding-left:5px;'></i>")
else if (data_type=="percent") html_attributes <- paste(html_attributes,"<i class='fa fa-percent' title='Data type: percent' style='padding-left:5px;'></i>")
else if (data_type=="date") html_attributes <- paste(html_attributes,"<i class='fa fa-calendar-alt' title='Data type: date' style='padding-left:5px;'></i>")
else if (data_type=="text") html_attributes <- paste(html_attributes,"<i class='fa fa-paragraph' title='Data type: text' style='padding-left:5px;'></i>")
else if (data_type=="logical") html_attributes <- paste(html_attributes,"<i class='fa fa-grip-lines-vertical' title='Data type: true-false' style='padding-left:5px;'></i>")
if (is_system==TRUE) html_attributes <- paste(html_attributes,"<i class='fa fa-cogs' title='System Indicator' style='padding-left:5px;'></i>")
if (toupper(is_calculated)=="TRUE") html_attributes <- paste(html_attributes,"<i class='fa fa-calculator' title='Calculated Indicator' style='padding-left:5px;'></i>")
if (is.na(options_group_name)==FALSE) html_attributes <- paste(html_attributes,"<i class='fa fa-sitemap' title='Assigned choices type: ",options_group_name,"' style='padding-left:5px;'></i>")
user_subscribed <- fcase(is.null(user_subscription),"",
user_subscription==TRUE,
paste0("<i ",htmluserid," class='fa-regular fa-circle-check' style='color:white;font-size:12px;'></i>"),
user_subscription==FALSE,
paste0("<i ",htmluserid," class='fa-regular fa-circle-xmark' style='color:white;font-size:12px;'></i>"),
default=paste0("<i ",htmluserid," class='fa-regular fa-circle-question' style='color:white;font-size:12px;'></i>"))
html_attributes <- paste(html_attributes,"</div>")
html_status <- "<div style='display:inline-block;vertical-align:middle'>"
#if (is_hidden==TRUE) html_status <- paste(html_status,"<i class='fa fa-user-secret' style='color:purple;padding-left:5px;' title='Indicator is hidden: will not appear in searches or downloads; but will be saved on uploads'></i>")
#if (is_deprecated==TRUE) html_status <- paste(html_status,"<i class='fa fa-ban' style='color:red;padding-left:5px;' title='Indicator is deprecated and no longer used by this RSF Program (however old data reported when inidcator was previously used is retained)'></i>")
html_status <- paste(html_status,"</div>")
indicator_html <- paste0("<div style='display:inline-block;vertical-align:middle;'>",html_status,"
<div ",ifelse(isTruthy(id),
paste0("id='",id,"'"),
""),
"class='indicator_bubble indicator ",data_category," ",ifelse(is_subscribed==FALSE,"unsubscribed","")," ",ifelse(is_system,"disabled",""),"' style='vertical-align:middle;white-space:nowrap;display:inline-block;'>
",html_attributes,"
<div ",
ifelse(isTruthy(id),
paste0("id='",id,"-text'"),
"")
," style='display:inline-block;vertical-align:middle;font-size:12px;font-weight:bold;padding-left:5px;padding-right:10px;'>",indicator_name,"</div>
",user_subscribed,"
</div>
</div>")
return (indicator_html)
}
is.same_text <- function(a,b) {
x<-(is.na(a) & is.na(b)) | (as.character(a)==as.character(b))
ifelse(is.na(x),FALSE,x)
}
is.same_number <- function(a,b,sig_digits=CALCULATIONS_ENVIRONMENT$SIG_DIGITS) {
nas <- is.na(a) & is.na(b)
a <- suppressWarnings(as.numeric(a))
b <- suppressWarnings(as.numeric(b))
invert <- a < 1 & b < 1
invert[is.na(invert)] <- FALSE
a[invert] <- 1/a[invert]
b[invert] <- 1/b[invert]
x <- abs(a-b) < (1/10^sig_digits)
x[is.na(x)] <- FALSE #Both NAs will be TRUE, so means either A or B is NA, but not both. Means, not the same.
x[nas] <- TRUE #Both are NAs so means is the same.
x
}
user_send_email <- function(pool,
from="\"RSF JASON\"<[email protected]>",
to,
subject,
html) {
lookup <- db_user_check_email_exists(pool=pool,
RSF_MANAGEMENT_APPLICATION_ID,
to)
#to <- "[email protected]"
valid <- !empty(lookup)
if (!valid) stop(paste0("Invalid email address: ",to))
if (length(to) != 1) stop("Only one receipient may be defined")
print(paste0("user_send_email : emailing ",to," from ",from," subject: ",subject))
html <- as.character(html)
html <- gsub(">[[:space:]]+","> ",html) #Pandoc won't format html when line breaks exist; and it will crash when not having some spaces.
page <- paste0("<html>
<head><title>",subject,"</title></head>
<body style='font-family:Verdana;'>
<section id='emailbody'>",html,"</section>
</body>
</html>")
msg <- page
msg <- mime_part(msg)
msg[["headers"]][["Content-Type"]] <- "text/html"
tryCatch({
sendmail(from=from,
to=to,
subject=subject,
msg=msg,
control=list(smtpServer="lmail.worldbank.org"))
},
error=function(e) {
print(conditionMessage(e))
},
warning=function(w) {
print(conditionMessage(w))
})
}
format_name_abbreviation <- function(person_name)
{
re <- "^\\w{1}|\\w+-?\\w+$"
name <- unlist(regmatches(person_name, gregexpr(re, person_name)))
if (is.null(name) || all(is.na(name)) || length(name) != 2) name <- person_name
else name <- paste0(name[1],".",name[2])
return(name)
}
#See: https://stackoverflow.com/questions/60977641/r-function-for-rgba-to-hex-color-conversion
rgba2rgb <- function(color_RGBA,background_RGB=col2rgb("white")){
# get alpha
if (length(color_RGBA)==1) color_RGBA <- as.numeric(trimws(unlist(str_split(color_RGBA,","))))
if (length(color_RGBA) != 4) stop("color_RGBA should have 4 elements")
alpha=color_RGBA[4]
# get new color
new_col=matrix(c(
(1 - alpha) * background_RGB[1] + alpha * color_RGBA[1],
(1 - alpha) * background_RGB[2] + alpha * color_RGBA[2],
(1 - alpha) * background_RGB[3] + alpha * color_RGBA[3]),
nrow=3,ncol=1,dimnames=list(c("red","green","blue"))
)
return(new_col)
}
rgb2hex <- function(x) rgb(x[1], x[2], x[3], maxColorValue = 255)
rgba2hex <- function(color_RGBA,background_RGB) {
rgb2hex(rgba2rgb(color_RGBA = color_RGBA))
}