|
8 | 8 | * CASMetabolitesTests: all 2 tests OK!
|
9 | 9 | * ChEBIMetabolitesTests: all 5 tests OK!
|
10 | 10 | * ChemSpiderTests: all 2 tests OK!
|
11 |
| -* DataNodesTests |
12 |
| - * dataNodesWithoutIdentifier: .x we found 1 problem(s): |
13 |
| - * [The following DataNodes have no identifier: 1](#d2d32fa0) |
14 |
| - * unknownTypes_knownDatasource: .. all OK! |
15 |
| - * unknownTypes: .. all OK! |
16 |
| - * unknownTypes_Reactome: .. all OK! |
17 |
| - * otherDataSource: .. all OK! |
| 11 | +* DataNodesTests: all 5 tests OK! |
18 | 12 | * EnsemblTests: all 4 tests OK!
|
19 |
| -* GeneTests: all 4 tests OK! |
| 13 | +* GeneTests |
| 14 | + * entrezGeneIdentifiersNotNumber: .x we found 1 problem(s): |
| 15 | + * [Entrez Gene identifiers that are not numbers: 1](#39c5c867) |
| 16 | + * affyProbeIdentifiersNotCorrect: .. all OK! |
| 17 | + * outdatedIdentifiers: .... all OK! |
| 18 | + * nonNumericHGNCAccessionNumbers: .. all OK! |
20 | 19 | * GeneralTests: all 15 tests OK!
|
21 | 20 | * HMDBSecMetabolitesTests: all 3 tests OK!
|
22 | 21 | * InteractionTests
|
|
51 | 50 |
|
52 | 51 | ## Fails
|
53 | 52 |
|
54 |
| -<a name="d2d32fa0" /> |
| 53 | +<a name="39c5c867" /> |
55 | 54 |
|
56 |
| -## Data nodes without an identifier |
| 55 | +## GeneTests.entrezGeneIdentifiersNotNumber |
57 | 56 |
|
58 |
| -The following DataNodes have no identifier: 1 |
59 |
| - |
60 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) http://rdf.wikipathways.org/Pathway/WP5236_r136193/DataNode/d87e1 (NOTCH2?) |
61 |
| - |
62 |
| - |
63 |
| -More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier) |
| 57 | +Entrez Gene identifiers that are not numbers: 1 |
| 58 | +``` |
| 59 | +http://classic.wikipathways.org/instance/WP5236_r136214 -> NOTCH2?, WP5236 |
| 60 | + ``` |
64 | 61 |
|
65 | 62 | <a name="fe97a8ff" />
|
66 | 63 |
|
67 | 64 | ## Interactions with Labels
|
68 | 65 |
|
69 | 66 | Interactions found that involve Labels: 39
|
70 | 67 |
|
71 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "EPOproducing |
| 68 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Pretubular |
| 69 | +aggregate" with graphId fa8cf |
| 70 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Primed |
| 71 | +NPC" with graphId c64d9 |
| 72 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "distal" with graphId c3aa3 |
| 73 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "stromal |
| 74 | +progenitors" with graphId dff7d |
| 75 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "intermediate |
| 76 | +mesoderm" with graphId b83d6 |
| 77 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "proximal" with graphId fd21c |
| 78 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "proximal" with graphId a61fa |
| 79 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "distal" with graphId ce10b |
| 80 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "intermediate" with graphId f8f61 |
| 81 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "PeriWolffian |
| 82 | +mesenchyme" with graphId a1e80 |
| 83 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "mesenchyme |
| 84 | +around aorta" with graphId ed07e |
| 85 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "lateral |
| 86 | +mesoderm" with graphId e49c0 |
| 87 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Vascular progenitors |
| 88 | +within kidney" with graphId e1405 |
| 89 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "distal segment" with graphId fef78 |
| 90 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "distal" with graphId d1fc1 |
| 91 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Peripheral stroma" with graphId a9280 |
| 92 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Renal capsule" with graphId c7421 |
| 93 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Blood vessels" with graphId ea3e7 |
| 94 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Angioblasts" with graphId aadaa |
| 95 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Medullary stroma" with graphId d06fa |
| 96 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "EPOproducing |
72 | 97 | cells" with graphId a45b0
|
73 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "stromal |
| 98 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "stromal |
74 | 99 | progenitors
|
75 | 100 | within kidney" with graphId ce3f1
|
76 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Vascular progenitors |
77 |
| -within kidney" with graphId e1405 |
78 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Angioblasts" with graphId aadaa |
79 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Peripheral stroma" with graphId a9280 |
80 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "stromal |
81 |
| -progenitors" with graphId dff7d |
82 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "intermediate |
83 |
| -mesoderm" with graphId b83d6 |
84 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Renal capsule" with graphId c7421 |
85 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Medullary stroma" with graphId d06fa |
86 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "proximal" with graphId fd21c |
87 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Pretubular |
88 |
| -aggregate" with graphId fa8cf |
89 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Blood vessels" with graphId ea3e7 |
90 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Ground state |
| 101 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Ureter |
| 102 | +mesenchyme" with graphId be598 |
| 103 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Henle's loop" with graphId bf28c |
| 104 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "proximal segment" with graphId b74fd |
| 105 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "visceral |
| 106 | +epithelial cells |
| 107 | +(podocytes)" with graphId c88d3 |
| 108 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "proximal" with graphId e827a |
| 109 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Ureter |
| 110 | +smooth muscle" with graphId b825f |
| 111 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Ground state |
91 | 112 | NPC" with graphId b2b8f
|
92 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Metanephric |
| 113 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Metanephric |
93 | 114 | mesenchyme" with graphId a1d75
|
94 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "mesenchyme |
95 |
| -around aorta" with graphId ed07e |
96 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "pericytes" with graphId f6b16 |
97 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "parietal |
98 |
| -epithelial cells |
99 |
| -(Bowman's capsule)" with graphId e14a1 |
100 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "proximal" with graphId e827a |
101 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "PeriWolffian |
102 |
| -mesenchyme" with graphId a1e80 |
103 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "integration |
104 |
| -into kidney" with graphId fdefc |
105 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "proximal segment" with graphId b74fd |
106 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "visceral |
| 115 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Renin positive cell" with graphId e83c1 |
| 116 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "Cortical stroma" with graphId dff52 |
| 117 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "pericytes" with graphId f6b16 |
| 118 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "visceral |
107 | 119 | epithelial cells
|
108 | 120 | (podocytes)" with graphId f918c
|
109 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "visceral |
| 121 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "parietal |
110 | 122 | epithelial cells
|
111 |
| -(podocytes)" with graphId c88d3 |
112 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "parietal |
| 123 | +(Bowman's capsule)" with graphId e14a1 |
| 124 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "integration |
| 125 | +into kidney" with graphId fdefc |
| 126 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "NPC" with graphId bed35 |
| 127 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "parietal |
113 | 128 | epithelial cells
|
114 | 129 | (Bowman's capsule)" with graphId c574c
|
115 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "distal" with graphId c3aa3 |
116 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "distal" with graphId ce10b |
117 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "distal" with graphId d1fc1 |
118 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "distal segment" with graphId fef78 |
119 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Ureter |
120 |
| -smooth muscle" with graphId b825f |
121 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Cortical stroma" with graphId dff52 |
122 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Primed |
123 |
| -NPC" with graphId c64d9 |
124 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "NPC" with graphId bed35 |
125 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Henle's loop" with graphId bf28c |
126 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "proximal" with graphId a61fa |
127 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Renin positive cell" with graphId e83c1 |
128 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "Ureter |
129 |
| -mesenchyme" with graphId be598 |
130 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "lateral |
131 |
| -mesoderm" with graphId e49c0 |
132 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "intermediate" with graphId f8f61 |
133 |
| -* [http://classic.wikipathways.org/instance/WP5236_r136193](http://classic.wikipathways.org/instance/WP5236_r136193) "paraxial |
| 130 | +* [http://classic.wikipathways.org/instance/WP5236_r136214](http://classic.wikipathways.org/instance/WP5236_r136214) "paraxial |
134 | 131 | mesoderm" with graphId dd4de
|
135 | 132 |
|
136 | 133 |
|
|
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