packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
}

@Manual{R-d3Network,
  title = {d3Network: Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R},
  author = {Christopher Gandrud},
  year = {2015},
  note = {R package version 0.5.2.1},
  url = {https://CRAN.R-project.org/package=d3Network},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2020},
  note = {R package version 1.0.1},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-ggforce,
  title = {ggforce: Accelerating 'ggplot2'},
  author = {Thomas Lin Pedersen},
  year = {2020},
  note = {https://ggforce.data-imaginist.com,
https://github.com/thomasp85/ggforce},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax},
  author = {Hao Zhu},
  year = {2020},
  note = {R package version 1.2.1},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 1.29},
  url = {https://CRAN.R-project.org/package=knitr},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2020},
  note = {R package version 4.9.2.1},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-psych,
  title = {psych: Procedures for Psychological, Psychometric, and Personality
Research},
  author = {William Revelle},
  year = {2020},
  note = {R package version 2.0.8},
  url = {https://CRAN.R-project.org/package=psych},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-Rcpp,
  title = {Rcpp: Seamless R and C++ Integration},
  author = {Dirk Eddelbuettel and Romain Francois and JJ Allaire and Kevin Ushey and Qiang Kou and Nathan Russell and Douglas Bates and John Chambers},
  year = {2020},
  note = {R package version 1.0.5},
  url = {https://CRAN.R-project.org/package=Rcpp},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-rethinking,
  title = {rethinking: Statistical Rethinking book package},
  author = {Richard McElreath},
  year = {2020},
  note = {R package version 2.12},
}

@Manual{R-rstan,
  title = {rstan: R Interface to Stan},
  author = {Jiqiang Guo and Jonah Gabry and Ben Goodrich and Sebastian Weber},
  year = {2020},
  note = {R package version 2.21.2},
  url = {https://CRAN.R-project.org/package=rstan},
}

@Manual{R-StanHeaders,
  title = {StanHeaders: C++ Header Files for Stan},
  author = {Ben Goodrich and Andrew Gelman and Bob Carpenter and Matt Hoffman and Daniel Lee and Michael Betancourt and Marcus Brubaker and Jiqiang Guo and Peter Li and Allen Riddell and Marco Inacio and Mitzi Morris and Jeffrey Arnold and Rob Goedman and Brian Lau and Rob Trangucci and Jonah Gabry and Alp Kucukelbir and Robert Grant and Dustin Tran and Michael Malecki and Yuanjun Gao},
  year = {2020},
  note = {R package version 2.21.0-6},
  url = {https://CRAN.R-project.org/package=StanHeaders},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.3},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Lionel Henry},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the 'Tidyverse'},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Article{Rcpp2011,
  title = {{Rcpp}: Seamless {R} and {C++} Integration},
  author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {8},
  pages = {1--18},
  url = {http://www.jstatsoft.org/v40/i08/},
  doi = {10.18637/jss.v040.i08},
}

@Book{Rcpp2013,
  title = {Seamless {R} and {C++} Integration with {Rcpp}},
  author = {Dirk Eddelbuettel},
  publisher = {Springer},
  address = {New York},
  year = {2013},
  note = {ISBN 978-1-4614-6867-7},
  doi = {10.1007/978-1-4614-6868-4},
}

@Article{Rcpp2017,
  title = {{Extending 	extit{R} with 	extit{C++}: A Brief Introduction to 	extit{Rcpp}}},
  author = {Dirk Eddelbuettel and James Joseph Balamuta},
  journal = {PeerJ Preprints},
  year = {2017},
  month = {aug},
  volume = {5},
  pages = {e3188v1},
  issn = {2167-9843},
  url = {https://doi.org/10.7287/peerj.preprints.3188v1},
  doi = {10.7287/peerj.preprints.3188v1},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}