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Copy pathNRG1Amplicon_Monocytes_long.gtf
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NRG1Amplicon_Monocytes_long.gtf
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# ./stringtie /data/gpfs/projects/punim1739/AmpliconNRG1/Output_files/barcode87_H3_Monocytes_alpha_2.sorted.bam
# StringTie version 2.2.1
chr1 StringTie transcript 9268328 9270522 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "151.043732"; FPKM "2234.854980"; TPM "3798.453857";
chr1 StringTie exon 9268328 9270522 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "151.043732";
chr2 StringTie transcript 32916199 32916625 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.714286"; FPKM "84.549026"; TPM "143.703094";
chr2 StringTie exon 32916199 32916625 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.714286";
chr2 StringTie transcript 207567473 207577610 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "30.464626"; FPKM "450.757019"; TPM "766.125671";
chr2 StringTie exon 207567473 207567563 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "30.725275";
chr2 StringTie exon 207570179 207570321 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "30.601398";
chr2 StringTie exon 207575272 207575454 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "30.125683";
chr2 StringTie exon 207577505 207577610 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "30.641510";
chr5 StringTie transcript 14611559 14612213 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "48.229008"; FPKM "713.600159"; TPM "1212.865112";
chr5 StringTie exon 14611559 14612213 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "48.229008";
chr5 StringTie transcript 14695857 14696986 1000 . . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "1229.236328"; FPKM "18187.876953"; TPM "30912.886719";
chr5 StringTie exon 14695857 14696986 1000 . . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "1229.236328";
chr8 StringTie transcript 32614426 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "33126.332031"; FPKM "490139.812500"; TPM "833062.375000";
chr8 StringTie exon 32614426 32614564 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "32315.597656";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "2"; cov "34431.609375";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "3"; cov "34052.351562";
chr8 StringTie exon 32742008 32742075 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "4"; cov "31665.007812";
chr8 StringTie exon 32754372 32754474 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "5"; cov "31686.052734";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "6"; cov "31686.773438";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "7"; cov "31720.494141";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "8"; cov "32128.849609";
chr8 StringTie exon 32763748 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "9"; cov "34076.621094";
chr8 StringTie transcript 32614426 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; cov "2728.008057"; FPKM "40363.820312"; TPM "68604.054688";
chr8 StringTie exon 32614426 32614564 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "1"; cov "2551.509277";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "2"; cov "2718.580811";
chr8 StringTie exon 32676084 32676195 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "3"; cov "3245.394043";
chr8 StringTie exon 32727949 32728054 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "4"; cov "2720.372314";
chr8 StringTie exon 32760365 32760406 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "5"; cov "2664.103516";
chr8 StringTie exon 32763748 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "6"; cov "2690.552734";
chr8 StringTie transcript 32614426 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; cov "1815.512085"; FPKM "26862.458984"; TPM "45656.574219";
chr8 StringTie exon 32614426 32614564 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "1"; cov "1745.682861";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "2"; cov "1859.989380";
chr8 StringTie exon 32676084 32676195 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "3"; cov "2220.422607";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "4"; cov "1839.502197";
chr8 StringTie exon 32742008 32742075 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "5"; cov "1710.538208";
chr8 StringTie exon 32754372 32754474 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "6"; cov "1711.675049";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "7"; cov "1711.714111";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "8"; cov "1713.535767";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "9"; cov "1735.594849";
chr8 StringTie exon 32763748 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.3"; exon_number "10"; cov "1840.813354";
chr8 StringTie transcript 32614426 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; cov "629.986755"; FPKM "9321.333008"; TPM "15842.932617";
chr8 StringTie exon 32614426 32614564 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; exon_number "1"; cov "589.515686";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; exon_number "2"; cov "628.116943";
chr8 StringTie exon 32676084 32676195 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; exon_number "3"; cov "749.834961";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; exon_number "4"; cov "621.198364";
chr8 StringTie exon 32763748 32764533 1000 + . gene_id "STRG.6"; transcript_id "STRG.6.4"; exon_number "5"; cov "621.641113";