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Copy pathNRG1Amplicon_IPSCProgenitors_long.gtf
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NRG1Amplicon_IPSCProgenitors_long.gtf
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# ./stringtie /data/gpfs/projects/punim1739/AmpliconNRG1/Output_files/barcode85_H1_Progenitors_alpha_2.sorted.bam
# StringTie version 2.2.1
chr1 StringTie transcript 9268329 9270520 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "14.481751"; FPKM "162.582520"; TPM "281.958740";
chr1 StringTie exon 9268329 9270520 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "14.481751";
chr1 StringTie transcript 39754280 39756122 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.000000"; FPKM "56.133583"; TPM "97.349670";
chr1 StringTie exon 39754280 39756122 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.000000";
chr1 StringTie transcript 156134899 156137204 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "213.231400"; FPKM "2393.888672"; TPM "4151.601074";
chr1 StringTie exon 156134899 156134975 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "207.168839";
chr1 StringTie exon 156135187 156135312 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "214.000000";
chr1 StringTie exon 156135901 156136121 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "213.538467";
chr1 StringTie exon 156136214 156136436 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "214.295959";
chr1 StringTie exon 156136921 156137028 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "214.944443";
chr1 StringTie exon 156137113 156137204 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "211.923920";
chr11 StringTie transcript 3367836 3368164 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "22.221884"; FPKM "249.478790"; TPM "432.658630";
chr11 StringTie exon 3367836 3368164 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "22.221884";
chr11 StringTie transcript 72008729 72009147 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "1.996644"; FPKM "22.415756"; TPM "38.874527";
chr11 StringTie exon 72008729 72008845 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "2.000000";
chr11 StringTie exon 72008967 72009147 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "1.994475";
chr12 StringTie transcript 49033695 49034618 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "302.107941"; FPKM "3391.680420"; TPM "5882.021973";
chr12 StringTie exon 49033695 49033964 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "303.721069";
chr12 StringTie exon 49034067 49034299 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "2"; cov "310.265686";
chr12 StringTie exon 49034410 49034476 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "3"; cov "307.974365";
chr12 StringTie exon 49034582 49034618 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "4"; cov "228.341827";
chr12 StringTie transcript 49033695 49034618 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.2"; cov "31.042805"; FPKM "348.508759"; TPM "604.401367";
chr12 StringTie exon 49033695 49033964 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "1"; cov "36.249325";
chr12 StringTie exon 49034067 49034299 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "2"; cov "37.030434";
chr12 StringTie exon 49034410 49034618 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.2"; exon_number "3"; cov "17.641478";
chr12 StringTie transcript 117155859 117172607 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "39.632011"; FPKM "444.937378"; TPM "771.632690";
chr12 StringTie exon 117155859 117155948 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "39.833332";
chr12 StringTie exon 117157873 117158063 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "2"; cov "40.000000";
chr12 StringTie exon 117165485 117165617 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "3"; cov "39.962402";
chr12 StringTie exon 117166898 117167077 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "4"; cov "40.233334";
chr12 StringTie exon 117172471 117172607 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "5"; cov "37.875916";
chr16 StringTie transcript 28098560 28117410 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "15.786160"; FPKM "177.226746"; TPM "307.355499";
chr16 StringTie exon 28098560 28098639 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "15.912500";
chr16 StringTie exon 28101458 28101688 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "2"; cov "16.000000";
chr16 StringTie exon 28101847 28101945 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "3"; cov "16.000000";
chr16 StringTie exon 28104546 28104707 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "4"; cov "16.000000";
chr16 StringTie exon 28106043 28106214 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "5"; cov "16.000000";
chr16 StringTie exon 28106383 28106497 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "6"; cov "16.000000";
chr16 StringTie exon 28107522 28107677 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "7"; cov "16.000000";
chr16 StringTie exon 28111817 28112006 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "8"; cov "16.000000";
chr16 StringTie exon 28112904 28113050 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "9"; cov "16.000000";
chr16 StringTie exon 28117318 28117410 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "10"; cov "12.752688";
chr17 StringTie transcript 57989347 57989748 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "4.987562"; FPKM "55.993946"; TPM "97.107506";
chr17 StringTie exon 57989347 57989748 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "4.987562";
chr17 StringTie transcript 82084358 82084892 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "20.892307"; FPKM "234.552017"; TPM "406.771881";
chr17 StringTie exon 82084358 82084384 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "20.000000";
chr17 StringTie exon 82084513 82084716 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "2"; cov "21.000000";
chr17 StringTie exon 82084799 82084892 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "3"; cov "20.914894";
chr3 StringTie transcript 129570918 129571725 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "14.916349"; FPKM "167.461624"; TPM "290.420349";
chr3 StringTie exon 129570918 129571303 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "14.906735";
chr3 StringTie exon 129571509 129571599 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "2"; cov "15.000000";
chr3 StringTie exon 129571677 129571725 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "3"; cov "14.836735";
chr5 StringTie transcript 14611559 14612220 1000 . . gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "1475.799072"; FPKM "16568.376953"; TPM "28733.710938";
chr5 StringTie exon 14611559 14612220 1000 . . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "1475.799072";
chr5 StringTie transcript 168724452 168774325 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "34.272064"; FPKM "384.762756"; TPM "667.274841";
chr5 StringTie exon 168724452 168724484 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "31.939394";
chr5 StringTie exon 168748302 168748434 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "2"; cov "35.000000";
chr5 StringTie exon 168749472 168749635 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "3"; cov "35.000000";
chr5 StringTie exon 168752955 168753098 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "4"; cov "34.562500";
chr5 StringTie exon 168753864 168754007 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "5"; cov "34.000000";
chr5 StringTie exon 168760862 168760936 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "6"; cov "34.000000";
chr5 StringTie exon 168762539 168762689 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "7"; cov "34.000000";
chr5 StringTie exon 168772781 168772944 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "8"; cov "34.000000";
chr5 StringTie exon 168774235 168774325 1000 - . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "9"; cov "33.879120";
chr6 StringTie transcript 21178601 21178943 1000 . . gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "334.696808"; FPKM "3757.546387"; TPM "6516.524902";
chr6 StringTie exon 21178601 21178943 1000 . . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "334.696808";
chr7 StringTie transcript 2257446 2269653 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "84.017075"; FPKM "943.235962"; TPM "1635.806885";
chr7 StringTie exon 2257446 2257514 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "86.391304";
chr7 StringTie exon 2257735 2257803 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "2"; cov "87.681160";
chr7 StringTie exon 2263230 2263362 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "3"; cov "86.819550";
chr7 StringTie exon 2264298 2264458 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "4"; cov "87.000008";
chr7 StringTie exon 2269559 2269653 1000 - . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "5"; cov "70.652634";
chr7 StringTie transcript 98988795 99012310 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "1.999073"; FPKM "22.443027"; TPM "38.921822";
chr7 StringTie exon 98988795 98988966 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "1.988372";
chr7 StringTie exon 98990455 98990619 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "2"; cov "2.000000";
chr7 StringTie exon 98992137 98992227 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "3"; cov "2.000000";
chr7 StringTie exon 98993538 98993737 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "4"; cov "2.000000";
chr7 StringTie exon 98994587 98994848 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "5"; cov "2.000000";
chr7 StringTie exon 99004190 99004415 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "6"; cov "2.000000";
chr7 StringTie exon 99005131 99005348 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "7"; cov "2.000000";
chr7 StringTie exon 99008377 99008561 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "8"; cov "2.000000";
chr7 StringTie exon 99011052 99011255 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "9"; cov "2.000000";
chr7 StringTie exon 99011341 99011535 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "10"; cov "2.000000";
chr7 StringTie exon 99012071 99012310 1000 + . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "11"; cov "2.000000";
chr8 StringTie transcript 32614421 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "30740.261719"; FPKM "345112.218750"; TPM "598510.875000";
chr8 StringTie exon 32614421 32614564 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "29701.798828";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "2"; cov "32821.031250";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "3"; cov "30779.373047";
chr8 StringTie exon 32742008 32742075 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "4"; cov "30334.099609";
chr8 StringTie exon 32754372 32754474 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "5"; cov "30738.656250";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "6"; cov "30728.791016";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "7"; cov "30746.462891";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "8"; cov "30732.421875";
chr8 StringTie exon 32763748 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "9"; cov "30825.005859";
chr8 StringTie transcript 32614421 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; cov "8971.873047"; FPKM "100724.679688"; TPM "174681.781250";
chr8 StringTie exon 32614421 32614564 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "1"; cov "8647.910156";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "2"; cov "9556.097656";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "3"; cov "8961.654297";
chr8 StringTie exon 32742675 32742733 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "4"; cov "9458.110352";
chr8 StringTie exon 32754372 32754474 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "5"; cov "8949.798828";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "6"; cov "8946.926758";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "7"; cov "8952.072266";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "8"; cov "8947.984375";
chr8 StringTie exon 32763748 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.2"; exon_number "9"; cov "8974.939453";
chr8 StringTie transcript 32614421 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; cov "8020.399902"; FPKM "90042.757812"; TPM "156156.671875";
chr8 StringTie exon 32614421 32614564 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "1"; cov "7749.958984";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "2"; cov "8563.846680";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "3"; cov "8031.125488";
chr8 StringTie exon 32742008 32742075 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "4"; cov "7914.942871";
chr8 StringTie exon 32754372 32754474 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "5"; cov "8020.501953";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "6"; cov "8017.928223";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "7"; cov "8022.540039";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "8"; cov "8018.875488";
chr8 StringTie exon 32763218 32763359 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "9"; cov "8013.915527";
chr8 StringTie exon 32763748 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.3"; exon_number "10"; cov "8043.032715";
chr8 StringTie transcript 32614421 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; cov "999.821533"; FPKM "11224.712891"; TPM "19466.458984";
chr8 StringTie exon 32614421 32614564 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "1"; cov "964.340088";
chr8 StringTie exon 32616835 32616885 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "2"; cov "1065.613403";
chr8 StringTie exon 32727949 32728078 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "3"; cov "999.326111";
chr8 StringTie exon 32742008 32742075 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "4"; cov "984.869263";
chr8 StringTie exon 32742675 32742733 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "5"; cov "1054.686523";
chr8 StringTie exon 32754316 32754474 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "6"; cov "997.914673";
chr8 StringTie exon 32756403 32756529 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "7"; cov "997.683899";
chr8 StringTie exon 32759306 32759436 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "8"; cov "998.257751";
chr8 StringTie exon 32760200 32760406 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "9"; cov "997.801758";
chr8 StringTie exon 32763748 32764554 1000 + . gene_id "STRG.17"; transcript_id "STRG.17.4"; exon_number "10"; cov "1000.807678";
chr8 StringTie transcript 41933238 41933649 1000 . . gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "5.733010"; FPKM "64.362877"; TPM "111.621330";
chr8 StringTie exon 41933238 41933649 1000 . . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "5.733010";
chr9 StringTie transcript 35057014 35059097 1000 - . gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "5.914573"; FPKM "66.401237"; TPM "115.156349";
chr9 StringTie exon 35057014 35057222 1000 - . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "6.000000";
chr9 StringTie exon 35057376 35057530 1000 - . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "2"; cov "6.000000";
chr9 StringTie exon 35059064 35059097 1000 - . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "3"; cov "5.000000";