build.sbt

name := "MotifMaker"

organization in ThisBuild := "pacbio.smrt.motifmaker"

scalaVersion in ThisBuild := "2.11.8"

//scalacOptions in ThisBuild := Seq("-unchecked", "-deprecation", "-encoding", "utf8", "-feature")
scalacOptions in ThisBuild := Seq("-encoding", "utf8", "-feature")

//val buildNumber = (if (sys.env.get("bamboo_buildNumber").isDefined) sys.env("bamboo_buildNumber") else "0")
version in ThisBuild := "0.3.2-SNAPSHOT"

credentials in ThisBuild += Credentials(Path.userHome / ".ivy2" / ".credentials")
publishTo in ThisBuild := {
  val nexus = "http://ossnexus.pacificbiosciences.com/repository/"
  if (isSnapshot.value) Some("Nexus snapshots" at nexus + "maven-snapshots")
  else Some("Nexus releases" at nexus + "maven-releases")
}

packSettings

lazy val motifMaker = (
  Project("MotifMaker", file("."))
    settings (
      libraryDependencies ++= Seq(
        "org.scala-lang.modules" %% "scala-xml" % "1.0.2",
        "com.github.scopt" %% "scopt" % "3.4.0",
        "au.com.bytecode" % "opencsv" % "2.4",
        "com.beust" % "jcommander" % "1.27",
        "org.specs2" % "specs2_2.11" % "2.4.1-scalaz-7.0.6" % "test"
      )
    )
  )
  .disablePlugins(plugins.JUnitXmlReportPlugin)
  .settings(
    mainClass in assembly := Some("com.pacbio.basemods.Program"),
    initialCommands in (Test, console) := """ammonite.repl.Main.run("")""",
    testOptions in Test += Tests.Argument(TestFrameworks.Specs2, "junitxml", "console"))

packMain := Map("motifMaker" -> "com.pacbio.basemods.Program")