progress on #472 Geneformer

Author: PetrKralCZ

472_Geneformer/framework.patch

@@ -0,0 +1,60 @@
+diff --git a/easybuild/framework/easyblock.py b/easybuild/framework/easyblock.py
+index a515bc4c8..c0b7e3553 100644
+--- a/easybuild/framework/easyblock.py
++++ b/easybuild/framework/easyblock.py
+@@ -2378,6 +2378,14 @@ class EasyBlock(object):
+                 raise EasyBuildError("EasyBuild-version %s is newer than the currently running one. Aborting!",
+                                      easybuild_version)
+ 
++        source_deps = self.cfg['source_deps']
++        pre_fetch_env = None
++        # load modules for source dependencies (if any)
++        if source_deps:
++            pre_fetch_env = copy.deepcopy(os.environ)
++            source_deps_mod_names = [d['short_mod_name'] for d in source_deps]
++            self.modules_tool.load(source_deps_mod_names)
++
+         start_progress_bar(PROGRESS_BAR_DOWNLOAD_ALL, self.cfg.count_files())
+ 
+         if self.dry_run:
+@@ -2464,6 +2472,9 @@ class EasyBlock(object):
+ 
+         stop_progress_bar(PROGRESS_BAR_DOWNLOAD_ALL)
+ 
++        if pre_fetch_env:
++            restore_env(pre_fetch_env)
++
+     def checksum_step(self):
+         """Verify checksum of sources and patches, if a checksum is available."""
+         for fil in self.src + self.patches:
+diff --git a/easybuild/framework/easyconfig/default.py b/easybuild/framework/easyconfig/default.py
+index 7c1b5acab..5ce8cdaca 100644
+--- a/easybuild/framework/easyconfig/default.py
++++ b/easybuild/framework/easyconfig/default.py
+@@ -170,6 +170,7 @@ DEFAULT_CONFIG = {
+     'multi_deps_load_default': [True, "Load module for first version listed in multi_deps by default", DEPENDENCIES],
+     'osdependencies': [[], "OS dependencies that should be present on the system", DEPENDENCIES],
+     'moddependpaths': [None, "Absolute path(s) to prepend to MODULEPATH before loading dependencies", DEPENDENCIES],
++    'source_deps': [[], "source dependencies that should be present befory getting the sources", DEPENDENCIES],
+ 
+     # LICENSE easyconfig parameters
+     'accept_eula': [False, "Accepted End User License Agreement (EULA) for this software", LICENSE],
+diff --git a/easybuild/framework/easyconfig/easyconfig.py b/easybuild/framework/easyconfig/easyconfig.py
+index 57c910c74..04db92add 100644
+--- a/easybuild/framework/easyconfig/easyconfig.py
++++ b/easybuild/framework/easyconfig/easyconfig.py
+@@ -766,6 +766,14 @@ class EasyConfig(object):
+                 builddeps = [self._parse_dependency(dep, build_only=True) for dep in builddeps]
+             self['builddependencies'] = remove_false_versions(builddeps)
+ 
++            sourcedeps = self['source_deps']
++            if sourcedeps and all(isinstance(x, (list, tuple)) for b in sourcedeps for x in b):
++                self.iterate_options.append('source_deps')
++                sourcedeps = [[self._parse_dependency(dep, build_only=True) for dep in x] for x in sourcedeps]
++            else:
++                sourcedeps = [self._parse_dependency(dep, build_only=True) for dep in sourcedeps]
++            self['source_deps'] = remove_false_versions(sourcedeps)
++
+             # keep track of parsed multi deps, they'll come in handy during sanity check & module steps...
+             self.multi_deps = self.get_parsed_multi_deps()
+