extra parameters checks added

Author: AldhairMedico

Diff for: gfalibs

@@ -16,7 +16,7 @@ struct UserInputTeloscope : UserInput {
     uint8_t kmerLen = 21;
     uint32_t step = 500;
     unsigned short int minBlockLen = 500; // Only for all blocks
-    unsigned short int maxBlockDist = 200;
+    unsigned short int maxBlockDist = 50;
     unsigned short int minBlockCounts = 2;
     uint32_t terminalLimit = 50000;
 
@@ -26,6 +26,7 @@ struct UserInputTeloscope : UserInput {
     bool outEntropy = false;
     bool outMatches = false;
     bool outITS = false;
+    bool ultraFastMode = true;
 
     double maxMem = 0;
     std::string prefix = ".", outFile = ""; // JACK: CHECK

Diff for: include/input.h

@@ -48,20 +48,19 @@ void Input::read(InSequences &inSequences) {
         }); 
 
     lg.verbose("Waiting for jobs to complete");
-    std::cout << "Waiting for jobs to complete" << std::endl;
+    std::cout << "Waiting for jobs to complete..." << std::endl;
 
     jobWait(threadPool); // Wait for all jobs to complete
-    lg.verbose("All jobs completed");
-    std::cout << "All jobs completed" << std::endl;
+    lg.verbose("\nAll jobs completed.");
 
     teloscope.sortBySeqPos();
-    lg.verbose("\nPaths sorted by original position");  
+    lg.verbose("\nPaths sorted by original position.");  
 
     teloscope.handleBEDFile();
-    lg.verbose("\nBED/BEDgraph files generated");
+    lg.verbose("\nBED/BEDgraph files generated.");
 
     teloscope.printSummary();
-    lg.verbose("\nSummary printed");
+    lg.verbose("\nSummary printed.");
 }