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Reports updated pt3
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Diff for: src/teloscope.cpp

+17-17
Original file line numberDiff line numberDiff line change
@@ -769,33 +769,33 @@ void Teloscope::handleBEDFile() {
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void Teloscope::printSummary() {
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std::cout << "\n+++ Assembly Summary Report +++\n";
772-
std::cout << "Total paths\t" << totalPaths << "\n";
773-
std::cout << "Total gaps\t" << totalGaps << "\n";
774-
std::cout << "Total telomeres\t" << totalTelomeres << "\n";
772+
std::cout << "Total paths:\t" << totalPaths << "\n";
773+
std::cout << "Total gaps:\t" << totalGaps << "\n";
774+
std::cout << "Total telomeres:\t" << totalTelomeres << "\n";
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if (!userInput.ultraFastMode) {
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std::cout << "Total ITS\t" << totalITS << "\n";
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std::cout << "Total canonical matches\t" << totalCanMatches << "\n";
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std::cout << "Total windows analyzed\t" << totalNWindows << "\n";
777+
std::cout << "Total ITS:\t" << totalITS << "\n";
778+
std::cout << "Total canonical matches:\t" << totalCanMatches << "\n";
779+
std::cout << "Total windows analyzed:\t" << totalNWindows << "\n";
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}
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// Chromosomes by telomere numbers
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std::cout << "\n+++ Chromosome Telomere Counts+++\n";
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std::cout << "Two telomeres\t" << totalT2T + totalGappedT2T + totalMissassembly + totalGappedMissassembly << "\n";
785-
std::cout << "One telomere\t" << totalIncomplete + totalGappedIncomplete << "\n";
786-
std::cout << "No telomeres\t" << totalNone + totalGappedNone << "\n";
784+
std::cout << "Two telomeres:\t" << totalT2T + totalGappedT2T + totalMissassembly + totalGappedMissassembly << "\n";
785+
std::cout << "One telomere:\t" << totalIncomplete + totalGappedIncomplete << "\n";
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std::cout << "No telomeres:\t" << totalNone + totalGappedNone << "\n";
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// Chromosomes by telomere completeness
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std::cout << "\n+++ Chromosome Telomere/Gap Completeness+++\n";
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std::cout << "T2T\t" << totalT2T << "\n";
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std::cout << "Gapped T2T\t" << totalGappedT2T << "\n";
790+
std::cout << "T2T:\t" << totalT2T << "\n";
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std::cout << "Gapped T2T:\t" << totalGappedT2T << "\n";
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793-
std::cout << "Missassembled\t" << totalMissassembly << "\n";
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std::cout << "Gapped missassembled\t" << totalGappedMissassembly << "\n";
793+
std::cout << "Missassembled:\t" << totalMissassembly << "\n";
794+
std::cout << "Gapped missassembled:\t" << totalGappedMissassembly << "\n";
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796-
std::cout << "Incomplete\t" << totalIncomplete << "\n";
797-
std::cout << "Gapped incomplete\t" << totalGappedIncomplete << "\n";
796+
std::cout << "Incomplete:\t" << totalIncomplete << "\n";
797+
std::cout << "Gapped incomplete:\t" << totalGappedIncomplete << "\n";
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799-
std::cout << "No telomeres\t" << totalNone << "\n";
800-
std::cout << "Gapped no telomeres\t" << totalGappedNone << "\n";
799+
std::cout << "No telomeres:\t" << totalNone << "\n";
800+
std::cout << "Gapped no telomeres:\t" << totalGappedNone << "\n";
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}

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