@@ -769,33 +769,33 @@ void Teloscope::handleBEDFile() {
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void Teloscope::printSummary () {
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std::cout << " \n +++ Assembly Summary Report +++\n " ;
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- std::cout << " Total paths\t " << totalPaths << " \n " ;
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- std::cout << " Total gaps\t " << totalGaps << " \n " ;
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- std::cout << " Total telomeres\t " << totalTelomeres << " \n " ;
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+ std::cout << " Total paths: \t " << totalPaths << " \n " ;
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+ std::cout << " Total gaps: \t " << totalGaps << " \n " ;
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+ std::cout << " Total telomeres: \t " << totalTelomeres << " \n " ;
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if (!userInput.ultraFastMode ) {
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- std::cout << " Total ITS\t " << totalITS << " \n " ;
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- std::cout << " Total canonical matches\t " << totalCanMatches << " \n " ;
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- std::cout << " Total windows analyzed\t " << totalNWindows << " \n " ;
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+ std::cout << " Total ITS: \t " << totalITS << " \n " ;
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+ std::cout << " Total canonical matches: \t " << totalCanMatches << " \n " ;
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+ std::cout << " Total windows analyzed: \t " << totalNWindows << " \n " ;
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}
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// Chromosomes by telomere numbers
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std::cout << " \n +++ Chromosome Telomere Counts+++\n " ;
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- std::cout << " Two telomeres\t " << totalT2T + totalGappedT2T + totalMissassembly + totalGappedMissassembly << " \n " ;
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- std::cout << " One telomere\t " << totalIncomplete + totalGappedIncomplete << " \n " ;
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- std::cout << " No telomeres\t " << totalNone + totalGappedNone << " \n " ;
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+ std::cout << " Two telomeres: \t " << totalT2T + totalGappedT2T + totalMissassembly + totalGappedMissassembly << " \n " ;
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+ std::cout << " One telomere: \t " << totalIncomplete + totalGappedIncomplete << " \n " ;
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+ std::cout << " No telomeres: \t " << totalNone + totalGappedNone << " \n " ;
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// Chromosomes by telomere completeness
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std::cout << " \n +++ Chromosome Telomere/Gap Completeness+++\n " ;
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- std::cout << " T2T\t " << totalT2T << " \n " ;
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- std::cout << " Gapped T2T\t " << totalGappedT2T << " \n " ;
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+ std::cout << " T2T: \t " << totalT2T << " \n " ;
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+ std::cout << " Gapped T2T: \t " << totalGappedT2T << " \n " ;
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- std::cout << " Missassembled\t " << totalMissassembly << " \n " ;
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- std::cout << " Gapped missassembled\t " << totalGappedMissassembly << " \n " ;
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+ std::cout << " Missassembled: \t " << totalMissassembly << " \n " ;
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+ std::cout << " Gapped missassembled: \t " << totalGappedMissassembly << " \n " ;
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- std::cout << " Incomplete\t " << totalIncomplete << " \n " ;
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- std::cout << " Gapped incomplete\t " << totalGappedIncomplete << " \n " ;
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+ std::cout << " Incomplete: \t " << totalIncomplete << " \n " ;
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+ std::cout << " Gapped incomplete: \t " << totalGappedIncomplete << " \n " ;
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- std::cout << " No telomeres\t " << totalNone << " \n " ;
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- std::cout << " Gapped no telomeres\t " << totalGappedNone << " \n " ;
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+ std::cout << " No telomeres: \t " << totalNone << " \n " ;
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+ std::cout << " Gapped no telomeres: \t " << totalGappedNone << " \n " ;
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}
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