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Another option to consider is to flag genes that may be important from the biological/clinical point of view (cancer genes etc) but which have few supporting reads, hence may be prone to big variability even due to relatively small changes in comparison to the reference/baseline data.
Update method in the report to specify cancer genes from the internal list are kept even if the expression of these genes is low.
To-do:
Filter cancer genes if the expression is low.
Only keep the ones that are supported by WGS results - otherwise filter them.
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