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Make ModGP Outputs into RO-Crates #1
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Preliminary thoughtsRO-Crates provide a lightweight technology stack to implement the FAIR Digital Object concept based on common web technologies involving provision of structured (meta)data with schema.org extensions such as Bioschemas and typed relationships with FAIR Signposting. Data depositionThe generated outputs should be stored as RO-Crates (in the best case within a sustainable data repository that ensures the long-term availability of the data) and made available to clients via the web. The data should receive a PID. Some options could be
rohub.com seems to be the best option to quickly draft and publish an RO-Crate for one of the outputs of the generated outputs of ModGP |
E.g. publishing via ROHub could result in the following ROCrate metadata description
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An alternative to publishing the RO-Crate directly in a repository like ROHub would be to create RO-Crate as packaged The difference between the attached RO-Crate and the uploaded one is that in the "packaged" mode in the metadata file the IRIs are relative paths within the local directory structure, while after uploading to a repository the IRIs should become web-resolvable URLs. A minimal representation of the
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Update and provisional hackathon resultWe have manually modeled an example of how the ModGP output should be stored as an RO-Crate: By simply adding an Note that we have additionally also modeled a simplified RO-Crate which represents the ModGP tool itself and thus can be referenced from within the provenance section of the output RO-Crate (section Further below we provide some more documentation on the two example files OutlookIn order to publish the ModGP model and output data in a FAIR way, two steps are required:
Documentation on the two examplesOutput dataset RO-Crate
ModGP ComputationalWorkflow
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Improve fairness by packaging ModGP outputs into RO-Crates
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