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NEWS
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Changes in version 2.13.2 (2022-09-21)
+ fixed issue with tests
+ fixed issue with folders
Changes in version 2.11.1 (2022-03-31)
+ replaced dependency outliers with dixonTest
Changes in version 2.7.1 (2020-11-03)
+ fixed some warnings from R Check and BiocCheck
Changes in version 2.3.1 (2020-03-18)
+ added helpful output in case the gradient descent diverges
Changes in version 2.1.4 (2019-05-17)
+ minor changes
Changes in version 2.1.3 (2019-05-13)
+ Performance improvments
o regarding function calcSummary
o and calcScore
Changes in version 2.1.2 (2019-05-10)
+ New feature
o y-axis in boxplot function can now be logged
Changes in version 2.1.1 (2019-05-09)
+ New feature
o Implementation of outlier detection
Changes in version 2.0.0 (2019-04-30)
+ Code refactoring
o Simplification of the source code
o Changes to the API
o Extraction of the preprocessing function
o loss function is now exported
o renaming of functions
o Combination of calcPvals and calcMedians methods into one
+ Documentation
o Update of the README
o New Vignette
+ Serial execution of the methods is now the default
+ Performance improvments
o Usage of RCPP for further performance improvements
+ Change from GPL-2 to GPL-3 license
+ Removing of deprecated functions
+ Tests
o Implementation of further tests
Changes in version 1.13.11 (2018-10-25)
+ Tests
o Implementation of further tests
Changes in version 1.13.10 (2018-10-24)
+ Tests
o Test for the gdepoch function
+ Code refactoring
o Simplification of the source code
+ Performance improvements
Changes in version 1.13.9 (2018-10-23)
+ Tests
o Test for the loss function
+ Code refactoring
o Simplification of the source code
Changes in version 1.13.8 (2018-10-22)
+ New feature
o First implementation of tests with testthat
+ Code refactoring
o Simplification of the source code
Changes in version 1.13.7 (2018-10-10)
+ Bug fixes
Changes in version 1.13.6 (2018-10-05)
+ Bug fixes
o Some minor issues with the calculation of p-values are fixed
Changes in version 1.13.5 (2018-10-04)
+ New feature
o Checks for the validity of inputs added
+ Performance improvements
Changes in version 1.13.4 (2018-10-02)
+ Performance improvements
Changes in version 1.13.3 (2018-09-28)
+ Change of dependencies
o Usage of data.table for various functions for performance improvement
+ Code refactoring
o Simplification of the source code
Changes in version 1.13.2 (2018-09-27)
+ Bug fixes
o p-values couldn't be calculated for a gene with only missing values in a batch (#1)
Changes in version 1.13.1 (2018-09-25)
+ Change of dependencies
o BEclear uses now BiocParallel instead of snowfall for parallelisation
o roxygen2 is now used for the generating the documentation
+ Code refactoring
o Internal functions got extracted
o Methods have now all their own files
+ Bug fixes
+ Performance improvements
Changes in version 1.0.0 (2015-4-16)
+ Release with Bioconductor version 3.1
Changes in version 0.99.0 (2015-2-18)
+ Submitted to Bioconductor