From 3769bfbd863814d542ffe8c40df40f3118de755c Mon Sep 17 00:00:00 2001 From: Nicholas Wang <47401561+nkwang24@users.noreply.github.com> Date: Mon, 19 Aug 2024 23:51:22 -0700 Subject: [PATCH 1/2] Update GATK version --- config/default.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/default.config b/config/default.config index 05eb6f7..dddcc9b 100644 --- a/config/default.config +++ b/config/default.config @@ -19,7 +19,7 @@ params { // Docker images bcftools_version = '1.20_score-1.20-20240505' bedtools_version = '2.31.0' - gatk_version = '4.2.4.1' + gatk_version = '4.4.0.0' pipeval_version = '5.0.0-rc.3' samtools_version = '1.20' stablelift_version = 'branch-nwiltsie-regroup-modules' // FIXME From 2d52a74ed941611869bfbc8fcfa73242110339fd Mon Sep 17 00:00:00 2001 From: Nick Wiltsie Date: Tue, 20 Aug 2024 09:16:37 -0700 Subject: [PATCH 2/2] Update stablelift image to existing version --- config/default.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/default.config b/config/default.config index dddcc9b..4d808e9 100644 --- a/config/default.config +++ b/config/default.config @@ -22,7 +22,7 @@ params { gatk_version = '4.4.0.0' pipeval_version = '5.0.0-rc.3' samtools_version = '1.20' - stablelift_version = 'branch-nwiltsie-regroup-modules' // FIXME + stablelift_version = 'dev' // FIXME docker_image_bcftools = "${-> params.docker_container_registry}/bcftools-score:${params.bcftools_version}" docker_image_bedtools = "${-> params.docker_container_registry}/bedtools:${params.bedtools_version}"